Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 PNMT-202ENST00000394246 821 ntTSL 2 BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 GSN-206ENST00000394353 2311 ntTSL 2 BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 AC074338.1-201ENST00000416825 156 ntBASIC12.24□□□□□ -0.45
CCDC140Q96MF4 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 AC097493.3-201ENST00000509725 367 ntBASIC12.24□□□□□ -0.45
CCDC140Q96MF4 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 DUX4L27-201ENST00000554796 1261 ntBASIC12.24□□□□□ -0.45
CCDC140Q96MF4 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 AC100757.3-201ENST00000622361 1406 ntBASIC12.24□□□□□ -0.45
CCDC140Q96MF4 RAB34-223ENST00000636154 730 ntTSL 2 BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CCDC140Q96MF4 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 TMBIM7P-203ENST00000641617 1718 ntBASIC12.23□□□□□ -0.45
CCDC140Q96MF4 SLC9A7P1-201ENST00000554295 3311 ntBASIC12.23□□□□□ -0.45
CCDC140Q96MF4 Z97205.2-201ENST00000564697 1639 ntBASIC12.23□□□□□ -0.45
CCDC140Q96MF4 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 AL645939.2-201ENST00000427340 991 ntBASIC12.23□□□□□ -0.45
CCDC140Q96MF4 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 IGHV3-42-201ENST00000520410 361 ntBASIC12.23□□□□□ -0.45
CCDC140Q96MF4 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 MPI-209ENST00000564003 1195 ntTSL 2 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 AL844908.2-201ENST00000609461 460 ntBASIC12.23□□□□□ -0.45
CCDC140Q96MF4 AC106028.4-201ENST00000614509 607 ntBASIC12.23□□□□□ -0.45
CCDC140Q96MF4 AC093512.1-201ENST00000617969 520 ntBASIC12.23□□□□□ -0.45
CCDC140Q96MF4 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC12.23□□□□□ -0.45
CCDC140Q96MF4 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms