Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS3Q969F9 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
HPS3Q969F9 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC17.53■□□□□ 0.4
HPS3Q969F9 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HPS3Q969F9 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS3Q969F9 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
HPS3Q969F9 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
HPS3Q969F9 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS3Q969F9 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HPS3Q969F9 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HPS3Q969F9 AC091951.1-201ENST00000512854 2465 ntBASIC17.53■□□□□ 0.4
HPS3Q969F9 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS3Q969F9 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HPS3Q969F9 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HPS3Q969F9 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC17.52■□□□□ 0.4
HPS3Q969F9 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC17.52■□□□□ 0.4
HPS3Q969F9 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HPS3Q969F9 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
HPS3Q969F9 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HPS3Q969F9 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HPS3Q969F9 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HPS3Q969F9 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HPS3Q969F9 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HPS3Q969F9 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HPS3Q969F9 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC17.52■□□□□ 0.4
HPS3Q969F9 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
HPS3Q969F9 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC17.52■□□□□ 0.4
HPS3Q969F9 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HPS3Q969F9 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HPS3Q969F9 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HPS3Q969F9 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC17.52■□□□□ 0.4
HPS3Q969F9 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HPS3Q969F9 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC17.52■□□□□ 0.4
HPS3Q969F9 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.52■□□□□ 0.4
HPS3Q969F9 RAD18-204ENST00000418463 563 ntTSL 4 BASIC17.52■□□□□ 0.4
HPS3Q969F9 RAD18-205ENST00000421052 582 ntTSL 3 BASIC17.52■□□□□ 0.4
HPS3Q969F9 TREML5P-201ENST00000421694 576 ntBASIC17.52■□□□□ 0.4
HPS3Q969F9 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17.52■□□□□ 0.4
HPS3Q969F9 KRT18P64-201ENST00000434946 1219 ntBASIC17.52■□□□□ 0.4
HPS3Q969F9 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HPS3Q969F9 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HPS3Q969F9 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.52■□□□□ 0.4
HPS3Q969F9 AL512361.1-201ENST00000554200 418 ntBASIC17.52■□□□□ 0.4
HPS3Q969F9 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC17.52■□□□□ 0.4
HPS3Q969F9 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.52■□□□□ 0.4
HPS3Q969F9 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC17.52■□□□□ 0.4
HPS3Q969F9 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.52■□□□□ 0.4
HPS3Q969F9 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC17.52■□□□□ 0.4
HPS3Q969F9 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HPS3Q969F9 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HPS3Q969F9 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HPS3Q969F9 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.52■□□□□ 0.39
HPS3Q969F9 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
HPS3Q969F9 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC17.52■□□□□ 0.39
HPS3Q969F9 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
HPS3Q969F9 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC17.52■□□□□ 0.39
HPS3Q969F9 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HPS3Q969F9 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.39
HPS3Q969F9 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC17.52■□□□□ 0.39
HPS3Q969F9 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.52■□□□□ 0.39
HPS3Q969F9 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HPS3Q969F9 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HPS3Q969F9 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HPS3Q969F9 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
HPS3Q969F9 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.51■□□□□ 0.39
HPS3Q969F9 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.51■□□□□ 0.39
HPS3Q969F9 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC17.51■□□□□ 0.39
HPS3Q969F9 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HPS3Q969F9 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC17.51■□□□□ 0.39
HPS3Q969F9 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HPS3Q969F9 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HPS3Q969F9 C18orf15-201ENST00000623680 2534 ntBASIC17.51■□□□□ 0.39
HPS3Q969F9 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
HPS3Q969F9 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HPS3Q969F9 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HPS3Q969F9 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
HPS3Q969F9 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.51■□□□□ 0.39
HPS3Q969F9 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HPS3Q969F9 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC17.51■□□□□ 0.39
HPS3Q969F9 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC17.51■□□□□ 0.39
HPS3Q969F9 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
HPS3Q969F9 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.51■□□□□ 0.39
HPS3Q969F9 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HPS3Q969F9 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HPS3Q969F9 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HPS3Q969F9 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HPS3Q969F9 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
HPS3Q969F9 FO538757.1-201ENST00000623083 1397 ntBASIC17.51■□□□□ 0.39
HPS3Q969F9 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HPS3Q969F9 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC17.51■□□□□ 0.39
HPS3Q969F9 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
HPS3Q969F9 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HPS3Q969F9 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HPS3Q969F9 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.5■□□□□ 0.39
HPS3Q969F9 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
HPS3Q969F9 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
HPS3Q969F9 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC17.5■□□□□ 0.39
HPS3Q969F9 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HPS3Q969F9 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HPS3Q969F9 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms