Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
NKX2-3Q8TAU0 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 DEK-201ENST00000244776 1441 ntTSL 2 BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 AC020907.1-201ENST00000616460 1350 ntBASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 KRT43P-201ENST00000434019 910 ntBASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 USP40-206ENST00000443711 628 ntTSL 2 BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 BNIP3P42-201ENST00000454982 569 ntBASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 BNIP3P29-201ENST00000598302 571 ntBASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 AC011447.5-201ENST00000616168 564 ntBASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 AL158212.4-201ENST00000624062 1286 ntBASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 AC105250.1-201ENST00000509378 2057 ntBASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 TP73-209ENST00000603362 1668 ntTSL 5 BASIC18.6■□□□□ 0.57
NKX2-3Q8TAU0 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC18.59■□□□□ 0.57
NKX2-3Q8TAU0 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NKX2-3Q8TAU0 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC18.59■□□□□ 0.57
NKX2-3Q8TAU0 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NKX2-3Q8TAU0 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
NKX2-3Q8TAU0 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
NKX2-3Q8TAU0 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NKX2-3Q8TAU0 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC18.59■□□□□ 0.57
NKX2-3Q8TAU0 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NKX2-3Q8TAU0 APOC3-202ENST00000375345 604 ntTSL 5 BASIC18.59■□□□□ 0.57
NKX2-3Q8TAU0 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
NKX2-3Q8TAU0 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC18.59■□□□□ 0.57
NKX2-3Q8TAU0 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC18.59■□□□□ 0.57
NKX2-3Q8TAU0 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
NKX2-3Q8TAU0 TPRX2P-201ENST00000535362 881 ntBASIC18.59■□□□□ 0.57
NKX2-3Q8TAU0 SNX29P1-201ENST00000548357 1007 ntBASIC18.59■□□□□ 0.57
NKX2-3Q8TAU0 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NKX2-3Q8TAU0 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
NKX2-3Q8TAU0 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
NKX2-3Q8TAU0 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
NKX2-3Q8TAU0 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC18.59■□□□□ 0.57
NKX2-3Q8TAU0 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
NKX2-3Q8TAU0 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
NKX2-3Q8TAU0 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
NKX2-3Q8TAU0 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
NKX2-3Q8TAU0 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC18.58■□□□□ 0.57
NKX2-3Q8TAU0 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC18.58■□□□□ 0.57
NKX2-3Q8TAU0 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC18.58■□□□□ 0.57
NKX2-3Q8TAU0 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
NKX2-3Q8TAU0 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC18.58■□□□□ 0.57
NKX2-3Q8TAU0 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC18.58■□□□□ 0.57
NKX2-3Q8TAU0 AC105917.1-201ENST00000506637 2539 ntBASIC18.58■□□□□ 0.57
NKX2-3Q8TAU0 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
NKX2-3Q8TAU0 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
NKX2-3Q8TAU0 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
NKX2-3Q8TAU0 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
NKX2-3Q8TAU0 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 TMEM14DP-201ENST00000422205 345 ntBASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms