Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 AC079178.1-201ENST00000420915 656 ntBASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 AC105129.2-201ENST00000559536 390 ntBASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 MIR4313-201ENST00000580760 101 ntBASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 DIO1-215ENST00000610607 796 ntTSL 5 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 AC106886.4-201ENST00000623557 2502 ntBASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC16.81■□□□□ 0.28
CNKSR3Q6P9H4 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 AL023775.1-201ENST00000454907 1746 ntBASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 NDUFV2P1-201ENST00000596415 907 ntBASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 AC016629.1-201ENST00000596579 586 ntBASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 AL451050.2-201ENST00000606967 682 ntBASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 OR6D1P-203ENST00000641209 4860 ntBASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC16.8■□□□□ 0.28
CNKSR3Q6P9H4 AC148477.4-201ENST00000613430 1793 ntBASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 EIF4HP1-201ENST00000453115 687 ntBASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 MIR3619-201ENST00000579667 83 ntBASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 HCG18-245ENST00000602550 559 ntTSL 4 BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 PRSS30P-206ENST00000641773 873 ntBASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CNKSR3Q6P9H4 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms