Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 AC069218.1-201ENST00000435269 762 ntBASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 KLK11-210ENST00000600362 759 ntTSL 3 BASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 AC244452.3-201ENST00000636814 210 ntBASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC88AQ3V6T2 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC88AQ3V6T2 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC88AQ3V6T2 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC88AQ3V6T2 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CCDC88AQ3V6T2 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
CCDC88AQ3V6T2 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC19.02■□□□□ 0.64
CCDC88AQ3V6T2 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC19.02■□□□□ 0.64
CCDC88AQ3V6T2 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC88AQ3V6T2 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CCDC88AQ3V6T2 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC19.02■□□□□ 0.64
CCDC88AQ3V6T2 ACKR1-201ENST00000368121 1240 ntBASIC19.02■□□□□ 0.64
CCDC88AQ3V6T2 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC19.02■□□□□ 0.64
CCDC88AQ3V6T2 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC88AQ3V6T2 AC126915.1-201ENST00000522847 1038 ntBASIC19.02■□□□□ 0.64
CCDC88AQ3V6T2 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC88AQ3V6T2 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC19.02■□□□□ 0.64
CCDC88AQ3V6T2 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC88AQ3V6T2 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
CCDC88AQ3V6T2 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CCDC88AQ3V6T2 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
CCDC88AQ3V6T2 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CCDC88AQ3V6T2 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
CCDC88AQ3V6T2 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CCDC88AQ3V6T2 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CCDC88AQ3V6T2 AL662844.4-201ENST00000606367 2838 ntBASIC19.02■□□□□ 0.63
CCDC88AQ3V6T2 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 FAM8A4P-201ENST00000435433 1213 ntBASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 MAGEA5-201ENST00000446757 942 ntBASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 FLII-221ENST00000578558 2377 ntTSL 5 BASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 AL391280.1-201ENST00000506969 1062 ntBASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 AC132938.4-201ENST00000623835 848 ntBASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC88AQ3V6T2 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 FRMD6-AS1-201ENST00000617151 2229 ntBASIC19■□□□□ 0.63
CCDC88AQ3V6T2 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 MPV17-205ENST00000402310 906 ntTSL 5 BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 NDUFAB1P1-201ENST00000404262 460 ntBASIC19■□□□□ 0.63
CCDC88AQ3V6T2 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 PARVG-202ENST00000415224 999 ntTSL 2 BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 RN7SL774P-201ENST00000577467 290 ntBASIC19■□□□□ 0.63
CCDC88AQ3V6T2 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 KRT8P35-201ENST00000483942 1338 ntBASIC19■□□□□ 0.63
CCDC88AQ3V6T2 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC88AQ3V6T2 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms