Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL139384.1-201ENST00000612143 3047 ntBASIC18.66■□□□□ 0.58
HMGB1P09429 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB1P09429 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
HMGB1P09429 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
HMGB1P09429 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC18.66■□□□□ 0.58
HMGB1P09429 AC009090.5-201ENST00000624886 2285 ntBASIC18.66■□□□□ 0.58
HMGB1P09429 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC18.66■□□□□ 0.58
HMGB1P09429 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC18.66■□□□□ 0.58
HMGB1P09429 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC18.66■□□□□ 0.58
HMGB1P09429 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB1P09429 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC18.66■□□□□ 0.58
HMGB1P09429 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
HMGB1P09429 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC18.66■□□□□ 0.58
HMGB1P09429 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC18.66■□□□□ 0.58
HMGB1P09429 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
HMGB1P09429 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HMGB1P09429 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC18.65■□□□□ 0.58
HMGB1P09429 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB1P09429 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB1P09429 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB1P09429 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC18.65■□□□□ 0.58
HMGB1P09429 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC18.65■□□□□ 0.58
HMGB1P09429 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
HMGB1P09429 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB1P09429 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB1P09429 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB1P09429 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB1P09429 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.65■□□□□ 0.58
HMGB1P09429 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC18.65■□□□□ 0.58
HMGB1P09429 FAM86GP-201ENST00000448322 971 ntBASIC18.65■□□□□ 0.58
HMGB1P09429 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC18.65■□□□□ 0.58
HMGB1P09429 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC18.65■□□□□ 0.58
HMGB1P09429 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC18.65■□□□□ 0.58
HMGB1P09429 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC18.65■□□□□ 0.58
HMGB1P09429 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC18.65■□□□□ 0.58
HMGB1P09429 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC18.65■□□□□ 0.58
HMGB1P09429 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC18.65■□□□□ 0.58
HMGB1P09429 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB1P09429 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB1P09429 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
HMGB1P09429 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB1P09429 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC18.65■□□□□ 0.58
HMGB1P09429 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.65■□□□□ 0.58
HMGB1P09429 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC18.65■□□□□ 0.58
HMGB1P09429 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC18.65■□□□□ 0.58
HMGB1P09429 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB1P09429 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
HMGB1P09429 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC18.65■□□□□ 0.58
HMGB1P09429 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB1P09429 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC18.65■□□□□ 0.58
HMGB1P09429 STK33-217ENST00000534493 1895 ntTSL 2 BASIC18.65■□□□□ 0.58
HMGB1P09429 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC18.65■□□□□ 0.58
HMGB1P09429 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC18.65■□□□□ 0.58
HMGB1P09429 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC18.65■□□□□ 0.58
HMGB1P09429 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC18.65■□□□□ 0.58
HMGB1P09429 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HMGB1P09429 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HMGB1P09429 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HMGB1P09429 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HMGB1P09429 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HMGB1P09429 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
HMGB1P09429 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB1P09429 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB1P09429 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB1P09429 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB1P09429 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB1P09429 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB1P09429 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB1P09429 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC18.64■□□□□ 0.57
HMGB1P09429 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
HMGB1P09429 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB1P09429 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC18.64■□□□□ 0.57
HMGB1P09429 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC18.64■□□□□ 0.57
HMGB1P09429 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC18.64■□□□□ 0.57
HMGB1P09429 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
HMGB1P09429 AC025048.3-201ENST00000590609 569 ntBASIC18.64■□□□□ 0.57
HMGB1P09429 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC18.64■□□□□ 0.57
HMGB1P09429 AL158211.3-201ENST00000607385 239 ntBASIC18.64■□□□□ 0.57
HMGB1P09429 AC005702.4-201ENST00000618393 416 ntBASIC18.64■□□□□ 0.57
HMGB1P09429 RAB34-223ENST00000636154 730 ntTSL 2 BASIC18.64■□□□□ 0.57
HMGB1P09429 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC18.64■□□□□ 0.57
HMGB1P09429 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB1P09429 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB1P09429 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB1P09429 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB1P09429 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC18.64■□□□□ 0.57
HMGB1P09429 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC18.64■□□□□ 0.57
HMGB1P09429 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC18.64■□□□□ 0.57
HMGB1P09429 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB1P09429 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB1P09429 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
HMGB1P09429 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB1P09429 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
HMGB1P09429 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB1P09429 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms