Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
VIMP08670 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16■□□□□ 0.15
VIMP08670 AC211429.1-201ENST00000415277 523 ntBASIC16■□□□□ 0.15
VIMP08670 KRT17P6-201ENST00000453795 1220 ntBASIC16■□□□□ 0.15
VIMP08670 BX276092.5-203ENST00000456199 560 ntBASIC16■□□□□ 0.15
VIMP08670 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
VIMP08670 AC005412.3-201ENST00000580309 715 ntBASIC16■□□□□ 0.15
VIMP08670 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC16■□□□□ 0.15
VIMP08670 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
VIMP08670 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
VIMP08670 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
VIMP08670 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
VIMP08670 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC16■□□□□ 0.15
VIMP08670 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16■□□□□ 0.15
VIMP08670 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VIMP08670 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VIMP08670 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
VIMP08670 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC16■□□□□ 0.15
VIMP08670 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC15.99■□□□□ 0.15
VIMP08670 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
VIMP08670 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VIMP08670 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
VIMP08670 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
VIMP08670 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
VIMP08670 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.99■□□□□ 0.15
VIMP08670 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.99■□□□□ 0.15
VIMP08670 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VIMP08670 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.99■□□□□ 0.15
VIMP08670 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VIMP08670 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VIMP08670 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
VIMP08670 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC15.99■□□□□ 0.15
VIMP08670 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
VIMP08670 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VIMP08670 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VIMP08670 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VIMP08670 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC15.99■□□□□ 0.15
VIMP08670 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
VIMP08670 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
VIMP08670 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VIMP08670 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VIMP08670 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VIMP08670 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VIMP08670 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC15.99■□□□□ 0.15
VIMP08670 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VIMP08670 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC15.99■□□□□ 0.15
VIMP08670 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC15.99■□□□□ 0.15
VIMP08670 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
VIMP08670 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC15.99■□□□□ 0.15
VIMP08670 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC15.99■□□□□ 0.15
VIMP08670 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.99■□□□□ 0.15
VIMP08670 AC107918.2-201ENST00000530817 355 ntBASIC15.99■□□□□ 0.15
VIMP08670 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC15.99■□□□□ 0.15
VIMP08670 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC15.99■□□□□ 0.15
VIMP08670 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC15.99■□□□□ 0.15
VIMP08670 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC15.99■□□□□ 0.15
VIMP08670 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
VIMP08670 AC006011.2-201ENST00000621313 1158 ntBASIC15.99■□□□□ 0.15
VIMP08670 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC15.99■□□□□ 0.15
VIMP08670 AC148477.4-201ENST00000613430 1793 ntBASIC15.99■□□□□ 0.15
VIMP08670 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VIMP08670 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VIMP08670 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
VIMP08670 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
VIMP08670 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VIMP08670 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
VIMP08670 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC15.99■□□□□ 0.15
VIMP08670 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC15.99■□□□□ 0.15
VIMP08670 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
VIMP08670 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VIMP08670 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
VIMP08670 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VIMP08670 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC15.99■□□□□ 0.15
VIMP08670 AC140479.7-201ENST00000636301 2332 ntBASIC15.99■□□□□ 0.15
VIMP08670 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC15.98■□□□□ 0.15
VIMP08670 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
VIMP08670 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC15.98■□□□□ 0.15
VIMP08670 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
VIMP08670 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
VIMP08670 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.98■□□□□ 0.15
VIMP08670 NIN-202ENST00000324330 4364 ntTSL 5 BASIC15.98■□□□□ 0.15
VIMP08670 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.98■□□□□ 0.15
VIMP08670 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC15.98■□□□□ 0.15
VIMP08670 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms