Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL2A1P02458 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL2A1P02458 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC18.17■□□□□ 0.5
COL2A1P02458 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.16■□□□□ 0.5
COL2A1P02458 LRRC59-203ENST00000576448 1531 ntBASIC18.16■□□□□ 0.5
COL2A1P02458 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL2A1P02458 POM121L8P-201ENST00000417732 1281 ntBASIC18.16■□□□□ 0.5
COL2A1P02458 POM121L9P-203ENST00000441984 1285 ntBASIC18.16■□□□□ 0.5
COL2A1P02458 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC18.16■□□□□ 0.5
COL2A1P02458 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC18.16■□□□□ 0.5
COL2A1P02458 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC18.16■□□□□ 0.5
COL2A1P02458 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
COL2A1P02458 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC18.16■□□□□ 0.5
COL2A1P02458 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC18.16■□□□□ 0.5
COL2A1P02458 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC18.16■□□□□ 0.5
COL2A1P02458 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL2A1P02458 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL2A1P02458 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL2A1P02458 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL2A1P02458 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
COL2A1P02458 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL2A1P02458 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC18.16■□□□□ 0.5
COL2A1P02458 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC18.16■□□□□ 0.5
COL2A1P02458 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
COL2A1P02458 BCL2-203ENST00000589955 5011 ntBASIC18.16■□□□□ 0.5
COL2A1P02458 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL2A1P02458 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL2A1P02458 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL2A1P02458 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
COL2A1P02458 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL2A1P02458 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL2A1P02458 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL2A1P02458 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC18.15■□□□□ 0.5
COL2A1P02458 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL2A1P02458 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC18.15■□□□□ 0.5
COL2A1P02458 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC18.15■□□□□ 0.5
COL2A1P02458 ACR-203ENST00000529621 708 ntTSL 5 BASIC18.15■□□□□ 0.5
COL2A1P02458 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC18.15■□□□□ 0.5
COL2A1P02458 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC18.15■□□□□ 0.5
COL2A1P02458 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL2A1P02458 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
COL2A1P02458 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL2A1P02458 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL2A1P02458 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC18.15■□□□□ 0.5
COL2A1P02458 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
COL2A1P02458 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC18.15■□□□□ 0.5
COL2A1P02458 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC18.15■□□□□ 0.5
COL2A1P02458 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC18.15■□□□□ 0.5
COL2A1P02458 AL354989.2-201ENST00000435838 1540 ntBASIC18.15■□□□□ 0.5
COL2A1P02458 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL2A1P02458 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
COL2A1P02458 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
COL2A1P02458 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
COL2A1P02458 RPS3-201ENST00000278572 907 ntTSL 3 BASIC18.14■□□□□ 0.5
COL2A1P02458 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
COL2A1P02458 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
COL2A1P02458 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC18.14■□□□□ 0.5
COL2A1P02458 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
COL2A1P02458 MPV17-205ENST00000402310 906 ntTSL 5 BASIC18.14■□□□□ 0.5
COL2A1P02458 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC18.14■□□□□ 0.5
COL2A1P02458 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC18.14■□□□□ 0.5
COL2A1P02458 APOA2-204ENST00000464492 530 ntTSL 3 BASIC18.14■□□□□ 0.5
COL2A1P02458 RPSAP36-202ENST00000494591 1261 ntBASIC18.14■□□□□ 0.5
COL2A1P02458 AP003171.2-201ENST00000528208 925 ntBASIC18.14■□□□□ 0.5
COL2A1P02458 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC18.14■□□□□ 0.5
COL2A1P02458 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC18.14■□□□□ 0.5
COL2A1P02458 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC18.14■□□□□ 0.5
COL2A1P02458 AC103810.3-201ENST00000583567 96 ntBASIC18.14■□□□□ 0.5
COL2A1P02458 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
COL2A1P02458 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.5
COL2A1P02458 AC091271.1-201ENST00000611877 1162 ntBASIC18.14■□□□□ 0.5
COL2A1P02458 AL008638.5-201ENST00000623814 1298 ntBASIC18.14■□□□□ 0.5
COL2A1P02458 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL2A1P02458 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL2A1P02458 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
COL2A1P02458 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC18.14■□□□□ 0.49
COL2A1P02458 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL2A1P02458 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL2A1P02458 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC18.14■□□□□ 0.49
COL2A1P02458 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL2A1P02458 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
COL2A1P02458 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL2A1P02458 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL2A1P02458 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
COL2A1P02458 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL2A1P02458 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC18.14■□□□□ 0.49
COL2A1P02458 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL2A1P02458 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL2A1P02458 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL2A1P02458 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
COL2A1P02458 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL2A1P02458 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL2A1P02458 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL2A1P02458 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL2A1P02458 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL2A1P02458 SNX21-203ENST00000372541 771 ntTSL 2 BASIC18.14■□□□□ 0.49
COL2A1P02458 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC18.14■□□□□ 0.49
COL2A1P02458 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC18.14■□□□□ 0.49
COL2A1P02458 HSPB1P2-201ENST00000448722 546 ntBASIC18.14■□□□□ 0.49
COL2A1P02458 HOMER2P2-201ENST00000451621 847 ntBASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms