Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC15.82■□□□□ 0.12
LDB2O43679 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
LDB2O43679 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.82■□□□□ 0.12
LDB2O43679 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
LDB2O43679 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.82■□□□□ 0.12
LDB2O43679 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC15.82■□□□□ 0.12
LDB2O43679 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
LDB2O43679 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
LDB2O43679 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC15.81■□□□□ 0.12
LDB2O43679 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
LDB2O43679 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LDB2O43679 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
LDB2O43679 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
LDB2O43679 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LDB2O43679 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LDB2O43679 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LDB2O43679 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
LDB2O43679 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LDB2O43679 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LDB2O43679 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
LDB2O43679 HLA-DRB6-201ENST00000411500 1235 ntBASIC15.81■□□□□ 0.12
LDB2O43679 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LDB2O43679 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
LDB2O43679 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC15.81■□□□□ 0.12
LDB2O43679 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC15.81■□□□□ 0.12
LDB2O43679 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.81■□□□□ 0.12
LDB2O43679 LY6E-204ENST00000519546 971 ntTSL 2 BASIC15.81■□□□□ 0.12
LDB2O43679 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LDB2O43679 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.81■□□□□ 0.12
LDB2O43679 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LDB2O43679 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
LDB2O43679 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC15.81■□□□□ 0.12
LDB2O43679 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC15.81■□□□□ 0.12
LDB2O43679 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
LDB2O43679 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.81■□□□□ 0.12
LDB2O43679 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LDB2O43679 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
LDB2O43679 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
LDB2O43679 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
LDB2O43679 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.81■□□□□ 0.12
LDB2O43679 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
LDB2O43679 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
LDB2O43679 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC15.81■□□□□ 0.12
LDB2O43679 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LDB2O43679 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LDB2O43679 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LDB2O43679 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LDB2O43679 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
LDB2O43679 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LDB2O43679 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
LDB2O43679 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
LDB2O43679 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LDB2O43679 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
LDB2O43679 STK33-217ENST00000534493 1895 ntTSL 2 BASIC15.8■□□□□ 0.12
LDB2O43679 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.8■□□□□ 0.12
LDB2O43679 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LDB2O43679 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LDB2O43679 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LDB2O43679 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LDB2O43679 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LDB2O43679 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
LDB2O43679 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LDB2O43679 AC087499.5-201ENST00000452760 1342 ntBASIC15.8■□□□□ 0.12
LDB2O43679 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.8■□□□□ 0.12
LDB2O43679 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LDB2O43679 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LDB2O43679 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LDB2O43679 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC15.8■□□□□ 0.12
LDB2O43679 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LDB2O43679 MIR943-201ENST00000401286 94 ntBASIC15.8■□□□□ 0.12
LDB2O43679 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.8■□□□□ 0.12
LDB2O43679 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LDB2O43679 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
LDB2O43679 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
LDB2O43679 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC15.8■□□□□ 0.12
LDB2O43679 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.8■□□□□ 0.12
LDB2O43679 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC15.8■□□□□ 0.12
LDB2O43679 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
LDB2O43679 MPI-209ENST00000564003 1195 ntTSL 2 BASIC15.8■□□□□ 0.12
LDB2O43679 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LDB2O43679 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LDB2O43679 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
LDB2O43679 AL844908.2-201ENST00000609461 460 ntBASIC15.8■□□□□ 0.12
LDB2O43679 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.8■□□□□ 0.12
LDB2O43679 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
LDB2O43679 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC15.8■□□□□ 0.12
LDB2O43679 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
LDB2O43679 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LDB2O43679 AC112693.3-201ENST00000624819 1983 ntBASIC15.8■□□□□ 0.12
LDB2O43679 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.8■□□□□ 0.12
LDB2O43679 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms