Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 AC025048.3-201ENST00000590609 569 ntBASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 AL390955.2-201ENST00000603032 514 ntBASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 AC005702.4-201ENST00000618393 416 ntBASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 AL390754.1-201ENST00000619088 582 ntBASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 AC020658.6-201ENST00000623564 1870 ntBASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 AC136621.1-201ENST00000624017 2304 ntBASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC20.32■□□□□ 0.84
SMC4Q9NTJ3 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 AC011270.2-201ENST00000624293 2550 ntBASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 AC074338.1-201ENST00000416825 156 ntBASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 AL844908.2-201ENST00000609461 460 ntBASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 AMT-233ENST00000636522 1620 ntTSL 2 BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SMC4Q9NTJ3 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 RAD18-204ENST00000418463 563 ntTSL 4 BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 RAD18-205ENST00000421052 582 ntTSL 3 BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 AC055876.3-201ENST00000431496 288 ntBASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 AC138649.4-201ENST00000612222 287 ntBASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 AL590560.3-201ENST00000623350 461 ntBASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 ORC5-208ENST00000626700 344 ntTSL 3 BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 RAB34-223ENST00000636154 730 ntTSL 2 BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 LCK-206ENST00000373564 2137 ntTSL 5 BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 AC127383.1-201ENST00000444697 1800 ntBASIC20.3■□□□□ 0.84
SMC4Q9NTJ3 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 AC087499.5-201ENST00000452760 1342 ntBASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 AC090616.6-203ENST00000579186 1945 ntBASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC20.29■□□□□ 0.84
SMC4Q9NTJ3 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms