Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 AC087499.6-201ENST00000411576 835 ntBASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 INE1-201ENST00000456273 945 ntBASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 GIMAP3P-201ENST00000495150 836 ntBASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 RAB35-202ENST00000534951 939 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 AC020765.3-201ENST00000613051 740 ntBASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 IGHV3-72-202ENST00000621503 303 ntBASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC144BQ3MJ40 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 CDC14C-201ENST00000428251 1719 ntBASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 KRT8P12-202ENST00000472924 1397 ntBASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC18.4■□□□□ 0.54
CCDC144BQ3MJ40 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC144BQ3MJ40 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC18.39■□□□□ 0.54
CCDC144BQ3MJ40 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC144BQ3MJ40 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 AL031731.1-201ENST00000642131 2094 ntBASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 AP006294.1-201ENST00000415407 339 ntBASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 AC114501.2-201ENST00000439631 535 ntBASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 SERBP1P3-201ENST00000459980 809 ntBASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 CD81-207ENST00000481687 890 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 AC093004.1-201ENST00000508850 424 ntBASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 POLE2-203ENST00000553805 496 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 AC008494.3-201ENST00000606615 944 ntBASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 AL033527.5-202ENST00000641632 1098 ntBASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 IMPDH1P4-201ENST00000445028 1534 ntBASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC18.39■□□□□ 0.53
CCDC144BQ3MJ40 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC144BQ3MJ40 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms