Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC12.86□□□□□ -0.35
CX3CL1P78423 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC12.86□□□□□ -0.35
CX3CL1P78423 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC12.86□□□□□ -0.35
CX3CL1P78423 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC12.86□□□□□ -0.35
CX3CL1P78423 AP3S2-216ENST00000617003 1561 ntBASIC12.86□□□□□ -0.35
CX3CL1P78423 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CX3CL1P78423 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
CX3CL1P78423 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC12.85□□□□□ -0.35
CX3CL1P78423 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC12.85□□□□□ -0.35
CX3CL1P78423 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
CX3CL1P78423 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC12.85□□□□□ -0.35
CX3CL1P78423 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC12.85□□□□□ -0.35
CX3CL1P78423 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC12.85□□□□□ -0.35
CX3CL1P78423 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 CNN2P11-201ENST00000429351 262 ntBASIC12.85□□□□□ -0.35
CX3CL1P78423 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC12.85□□□□□ -0.35
CX3CL1P78423 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
CX3CL1P78423 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC12.85□□□□□ -0.35
CX3CL1P78423 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC12.85□□□□□ -0.35
CX3CL1P78423 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC12.85□□□□□ -0.35
CX3CL1P78423 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
CX3CL1P78423 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC12.85□□□□□ -0.35
CX3CL1P78423 AL596442.2-201ENST00000610240 980 ntBASIC12.85□□□□□ -0.35
CX3CL1P78423 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC12.85□□□□□ -0.35
CX3CL1P78423 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
CX3CL1P78423 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC12.85□□□□□ -0.35
CX3CL1P78423 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC12.85□□□□□ -0.35
CX3CL1P78423 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
CX3CL1P78423 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
CX3CL1P78423 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
CX3CL1P78423 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC12.85□□□□□ -0.35
CX3CL1P78423 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC12.85□□□□□ -0.35
CX3CL1P78423 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC12.85□□□□□ -0.35
CX3CL1P78423 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
CX3CL1P78423 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CX3CL1P78423 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC12.85□□□□□ -0.35
CX3CL1P78423 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC12.84□□□□□ -0.35
CX3CL1P78423 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CL1P78423 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CL1P78423 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CL1P78423 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CL1P78423 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
CX3CL1P78423 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CL1P78423 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CL1P78423 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CL1P78423 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CL1P78423 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CL1P78423 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CL1P78423 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CL1P78423 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CL1P78423 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CL1P78423 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC12.84□□□□□ -0.35
CX3CL1P78423 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC12.84□□□□□ -0.35
CX3CL1P78423 RPS8P6-201ENST00000426177 609 ntBASIC12.84□□□□□ -0.35
CX3CL1P78423 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CL1P78423 ALG1L8P-201ENST00000533887 760 ntBASIC12.84□□□□□ -0.35
CX3CL1P78423 RARRES2P9-201ENST00000565168 469 ntBASIC12.84□□□□□ -0.35
CX3CL1P78423 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC12.84□□□□□ -0.35
CX3CL1P78423 PAM16-215ENST00000577031 548 ntTSL 4 BASIC12.84□□□□□ -0.35
CX3CL1P78423 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC12.84□□□□□ -0.35
CX3CL1P78423 METTL23-205ENST00000588302 925 ntTSL 5 BASIC12.84□□□□□ -0.35
CX3CL1P78423 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC12.84□□□□□ -0.35
CX3CL1P78423 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CL1P78423 AL691403.2-201ENST00000618460 490 ntBASIC12.84□□□□□ -0.35
CX3CL1P78423 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CL1P78423 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC12.84□□□□□ -0.35
CX3CL1P78423 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CL1P78423 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CL1P78423 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CL1P78423 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CL1P78423 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CL1P78423 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC12.84□□□□□ -0.35
CX3CL1P78423 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CL1P78423 AC010491.1-201ENST00000563101 2797 ntBASIC12.84□□□□□ -0.35
CX3CL1P78423 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CX3CL1P78423 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC12.84□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms