Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC13.62□□□□□ -0.23
ABCA4P78363 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC13.62□□□□□ -0.23
ABCA4P78363 AC068587.3-201ENST00000526613 355 ntBASIC13.62□□□□□ -0.23
ABCA4P78363 RN7SL560P-201ENST00000577943 264 ntBASIC13.62□□□□□ -0.23
ABCA4P78363 GNRHR2-203ENST00000581100 1187 ntBASIC13.62□□□□□ -0.23
ABCA4P78363 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
ABCA4P78363 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC13.62□□□□□ -0.23
ABCA4P78363 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
ABCA4P78363 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC13.62□□□□□ -0.23
ABCA4P78363 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
ABCA4P78363 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC13.62□□□□□ -0.23
ABCA4P78363 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC13.62□□□□□ -0.23
ABCA4P78363 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC13.62□□□□□ -0.23
ABCA4P78363 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC13.62□□□□□ -0.23
ABCA4P78363 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC13.62□□□□□ -0.23
ABCA4P78363 AC134915.1-201ENST00000426461 574 ntBASIC13.62□□□□□ -0.23
ABCA4P78363 FTH1P14-201ENST00000482930 551 ntBASIC13.62□□□□□ -0.23
ABCA4P78363 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC13.62□□□□□ -0.23
ABCA4P78363 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC13.62□□□□□ -0.23
ABCA4P78363 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC13.62□□□□□ -0.23
ABCA4P78363 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC13.62□□□□□ -0.23
ABCA4P78363 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC13.62□□□□□ -0.23
ABCA4P78363 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC13.62□□□□□ -0.23
ABCA4P78363 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC13.62□□□□□ -0.23
ABCA4P78363 AL592424.1-201ENST00000563624 1536 ntBASIC13.62□□□□□ -0.23
ABCA4P78363 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
ABCA4P78363 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC13.62□□□□□ -0.23
ABCA4P78363 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
ABCA4P78363 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC13.61□□□□□ -0.23
ABCA4P78363 DRD5P1-201ENST00000456605 1438 ntBASIC13.61□□□□□ -0.23
ABCA4P78363 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC13.61□□□□□ -0.23
ABCA4P78363 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC13.61□□□□□ -0.23
ABCA4P78363 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC13.61□□□□□ -0.23
ABCA4P78363 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC13.61□□□□□ -0.23
ABCA4P78363 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC13.61□□□□□ -0.23
ABCA4P78363 IGHJ2P-201ENST00000454480 60 ntBASIC13.61□□□□□ -0.23
ABCA4P78363 FAM86LP-201ENST00000478302 853 ntBASIC13.61□□□□□ -0.23
ABCA4P78363 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 AC133539.2-201ENST00000604757 467 ntBASIC13.61□□□□□ -0.23
ABCA4P78363 AC244093.1-201ENST00000610837 814 ntBASIC13.61□□□□□ -0.23
ABCA4P78363 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 AC018892.3-201ENST00000623986 2499 ntBASIC13.61□□□□□ -0.23
ABCA4P78363 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
ABCA4P78363 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC13.61□□□□□ -0.23
ABCA4P78363 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
ABCA4P78363 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC13.61□□□□□ -0.23
ABCA4P78363 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
ABCA4P78363 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
ABCA4P78363 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
ABCA4P78363 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC13.61□□□□□ -0.23
ABCA4P78363 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC13.61□□□□□ -0.23
ABCA4P78363 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC13.61□□□□□ -0.23
ABCA4P78363 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC13.61□□□□□ -0.23
ABCA4P78363 AC124283.3-201ENST00000570869 594 ntBASIC13.61□□□□□ -0.23
ABCA4P78363 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC13.61□□□□□ -0.23
ABCA4P78363 AC009542.2-202ENST00000619004 1067 ntBASIC13.61□□□□□ -0.23
ABCA4P78363 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC13.61□□□□□ -0.23
ABCA4P78363 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms