Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA3P55318 ZEB1-AS1-208ENST00000607166 2503 ntBASIC11.98□□□□□ -0.49
FOXA3P55318 FGD5P1-202ENST00000614866 2498 ntBASIC11.98□□□□□ -0.49
FOXA3P55318 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC11.98□□□□□ -0.49
FOXA3P55318 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA3P55318 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA3P55318 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC11.98□□□□□ -0.49
FOXA3P55318 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC11.98□□□□□ -0.49
FOXA3P55318 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA3P55318 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC11.98□□□□□ -0.49
FOXA3P55318 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA3P55318 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
FOXA3P55318 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC11.98□□□□□ -0.49
FOXA3P55318 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC11.98□□□□□ -0.49
FOXA3P55318 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
FOXA3P55318 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA3P55318 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA3P55318 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA3P55318 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC11.98□□□□□ -0.49
FOXA3P55318 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA3P55318 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA3P55318 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA3P55318 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA3P55318 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC11.98□□□□□ -0.49
FOXA3P55318 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA3P55318 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC11.98□□□□□ -0.49
FOXA3P55318 POM121L3P-201ENST00000419331 1163 ntBASIC11.98□□□□□ -0.49
FOXA3P55318 CDK2AP2P3-201ENST00000422476 372 ntBASIC11.98□□□□□ -0.49
FOXA3P55318 KRT18P57-201ENST00000443599 1254 ntBASIC11.98□□□□□ -0.49
FOXA3P55318 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
FOXA3P55318 AC096582.2-201ENST00000510860 516 ntBASIC11.98□□□□□ -0.49
FOXA3P55318 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC11.98□□□□□ -0.49
FOXA3P55318 AL160237.2-201ENST00000556165 472 ntBASIC11.98□□□□□ -0.49
FOXA3P55318 AC005412.3-201ENST00000580309 715 ntBASIC11.98□□□□□ -0.49
FOXA3P55318 GZMM-202ENST00000592501 941 ntTSL 3 BASIC11.98□□□□□ -0.49
FOXA3P55318 BNIP3P18-201ENST00000593976 575 ntBASIC11.98□□□□□ -0.49
FOXA3P55318 AL139424.1-201ENST00000607572 797 ntBASIC11.98□□□□□ -0.49
FOXA3P55318 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC11.98□□□□□ -0.49
FOXA3P55318 AC005363.2-201ENST00000618631 242 ntBASIC11.98□□□□□ -0.49
FOXA3P55318 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC11.98□□□□□ -0.49
FOXA3P55318 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC11.98□□□□□ -0.49
FOXA3P55318 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA3P55318 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA3P55318 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA3P55318 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA3P55318 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA3P55318 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA3P55318 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA3P55318 AC092127.1-201ENST00000567093 3455 ntBASIC11.98□□□□□ -0.49
FOXA3P55318 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA3P55318 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
FOXA3P55318 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
FOXA3P55318 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA3P55318 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA3P55318 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC11.97□□□□□ -0.49
FOXA3P55318 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
FOXA3P55318 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC11.97□□□□□ -0.49
FOXA3P55318 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
FOXA3P55318 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
FOXA3P55318 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA3P55318 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA3P55318 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA3P55318 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC11.97□□□□□ -0.49
FOXA3P55318 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA3P55318 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC11.97□□□□□ -0.49
FOXA3P55318 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA3P55318 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA3P55318 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC11.97□□□□□ -0.49
FOXA3P55318 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
FOXA3P55318 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA3P55318 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC11.97□□□□□ -0.49
FOXA3P55318 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC11.97□□□□□ -0.49
FOXA3P55318 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA3P55318 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC11.97□□□□□ -0.49
FOXA3P55318 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC11.97□□□□□ -0.49
FOXA3P55318 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC11.97□□□□□ -0.49
FOXA3P55318 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA3P55318 RBSN-204ENST00000449050 903 ntTSL 2 BASIC11.97□□□□□ -0.49
FOXA3P55318 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC11.97□□□□□ -0.49
FOXA3P55318 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC11.97□□□□□ -0.49
FOXA3P55318 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC11.97□□□□□ -0.49
FOXA3P55318 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC11.97□□□□□ -0.49
FOXA3P55318 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
FOXA3P55318 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA3P55318 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC11.97□□□□□ -0.49
FOXA3P55318 TK2-213ENST00000563369 882 ntTSL 5 BASIC11.97□□□□□ -0.49
FOXA3P55318 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
FOXA3P55318 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA3P55318 AC064862.7-201ENST00000604520 867 ntBASIC11.97□□□□□ -0.49
FOXA3P55318 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA3P55318 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA3P55318 AC114341.1-201ENST00000618070 349 ntBASIC11.97□□□□□ -0.49
FOXA3P55318 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA3P55318 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
FOXA3P55318 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA3P55318 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA3P55318 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
FOXA3P55318 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA3P55318 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA3P55318 AC010327.5-201ENST00000586923 3061 ntBASIC11.97□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms