Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
CTCFP49711 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC18.25■□□□□ 0.51
CTCFP49711 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 PKD1P1-201ENST00000458669 6805 ntBASIC18.25■□□□□ 0.51
CTCFP49711 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 AGER-206ENST00000375070 1463 ntTSL 5 BASIC18.25■□□□□ 0.51
CTCFP49711 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC18.25■□□□□ 0.51
CTCFP49711 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CTCFP49711 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.25■□□□□ 0.51
CTCFP49711 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
CTCFP49711 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CTCFP49711 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
CTCFP49711 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTCFP49711 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CTCFP49711 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CTCFP49711 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.24■□□□□ 0.51
CTCFP49711 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTCFP49711 AC022211.2-201ENST00000585075 2527 ntBASIC18.24■□□□□ 0.51
CTCFP49711 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTCFP49711 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC18.24■□□□□ 0.51
CTCFP49711 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTCFP49711 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
CTCFP49711 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTCFP49711 AD000864.1-201ENST00000624076 2295 ntBASIC18.24■□□□□ 0.51
CTCFP49711 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.24■□□□□ 0.51
CTCFP49711 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC18.24■□□□□ 0.51
CTCFP49711 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.24■□□□□ 0.51
CTCFP49711 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CTCFP49711 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
CTCFP49711 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CTCFP49711 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC18.24■□□□□ 0.51
CTCFP49711 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTCFP49711 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
CTCFP49711 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTCFP49711 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTCFP49711 CD8B2-202ENST00000417670 633 ntBASIC18.24■□□□□ 0.51
CTCFP49711 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC18.24■□□□□ 0.51
CTCFP49711 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
CTCFP49711 AC012618.1-201ENST00000461223 412 ntBASIC18.24■□□□□ 0.51
CTCFP49711 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC18.24■□□□□ 0.51
CTCFP49711 AC019193.1-201ENST00000506678 823 ntBASIC18.24■□□□□ 0.51
CTCFP49711 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTCFP49711 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CTCFP49711 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC18.24■□□□□ 0.51
CTCFP49711 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CTCFP49711 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC18.24■□□□□ 0.51
CTCFP49711 PAM16-215ENST00000577031 548 ntTSL 4 BASIC18.24■□□□□ 0.51
CTCFP49711 WDR7-208ENST00000589935 544 ntTSL 4 BASIC18.24■□□□□ 0.51
CTCFP49711 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC18.24■□□□□ 0.51
CTCFP49711 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC18.24■□□□□ 0.51
CTCFP49711 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTCFP49711 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTCFP49711 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTCFP49711 AL671710.1-201ENST00000610245 2349 ntBASIC18.24■□□□□ 0.51
CTCFP49711 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTCFP49711 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTCFP49711 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTCFP49711 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC18.24■□□□□ 0.51
CTCFP49711 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CTCFP49711 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTCFP49711 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC18.23■□□□□ 0.51
CTCFP49711 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC18.23■□□□□ 0.51
CTCFP49711 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CTCFP49711 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTCFP49711 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.23■□□□□ 0.51
CTCFP49711 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTCFP49711 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
CTCFP49711 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
CTCFP49711 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTCFP49711 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CTCFP49711 AC026316.1-201ENST00000398900 414 ntBASIC18.23■□□□□ 0.51
CTCFP49711 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC18.23■□□□□ 0.51
CTCFP49711 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CTCFP49711 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
CTCFP49711 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC18.23■□□□□ 0.51
CTCFP49711 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC18.23■□□□□ 0.51
CTCFP49711 AL161670.2-201ENST00000557650 1227 ntBASIC18.23■□□□□ 0.51
CTCFP49711 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC18.23■□□□□ 0.51
CTCFP49711 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC18.23■□□□□ 0.51
CTCFP49711 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC18.23■□□□□ 0.51
CTCFP49711 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC18.23■□□□□ 0.51
CTCFP49711 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTCFP49711 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTCFP49711 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTCFP49711 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CTCFP49711 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
CTCFP49711 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTCFP49711 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CTCFP49711 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CTCFP49711 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms