Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
CDX1P47902 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 AC131009.4-201ENST00000624048 1740 ntBASIC13.05□□□□□ -0.32
CDX1P47902 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC13.04□□□□□ -0.32
CDX1P47902 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC13.04□□□□□ -0.32
CDX1P47902 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
CDX1P47902 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 AC041040.2-201ENST00000622926 2899 ntBASIC13.04□□□□□ -0.32
CDX1P47902 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC13.04□□□□□ -0.32
CDX1P47902 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC13.04□□□□□ -0.32
CDX1P47902 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC13.04□□□□□ -0.32
CDX1P47902 AC092919.2-201ENST00000623631 1645 ntBASIC13.04□□□□□ -0.32
CDX1P47902 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC13.04□□□□□ -0.32
CDX1P47902 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC13.04□□□□□ -0.32
CDX1P47902 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC13.04□□□□□ -0.32
CDX1P47902 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC13.04□□□□□ -0.32
CDX1P47902 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC13.04□□□□□ -0.32
CDX1P47902 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC13.04□□□□□ -0.32
CDX1P47902 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
CDX1P47902 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
CDX1P47902 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 MTRF1LP2-201ENST00000506027 1122 ntBASIC13.04□□□□□ -0.32
CDX1P47902 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC13.04□□□□□ -0.32
CDX1P47902 AP000344.2-201ENST00000512987 629 ntBASIC13.04□□□□□ -0.32
CDX1P47902 PUS1-205ENST00000535067 838 ntTSL 3 BASIC13.04□□□□□ -0.32
CDX1P47902 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC13.04□□□□□ -0.32
CDX1P47902 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC13.04□□□□□ -0.32
CDX1P47902 MPDU1-223ENST00000582151 728 ntBASIC13.04□□□□□ -0.32
CDX1P47902 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
CDX1P47902 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
CDX1P47902 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
CDX1P47902 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
CDX1P47902 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
CDX1P47902 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 AC006486.2-201ENST00000624246 2199 ntBASIC13.04□□□□□ -0.32
CDX1P47902 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC13.04□□□□□ -0.32
CDX1P47902 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC13.04□□□□□ -0.32
CDX1P47902 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
CDX1P47902 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CDX1P47902 AL161772.1-201ENST00000610494 4412 ntBASIC13.04□□□□□ -0.32
CDX1P47902 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC13.04□□□□□ -0.32
CDX1P47902 UCKL1-AS1-201ENST00000623569 3602 ntBASIC13.03□□□□□ -0.32
CDX1P47902 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 AP005117.1-202ENST00000581724 1908 ntBASIC13.03□□□□□ -0.32
CDX1P47902 AC092053.1-201ENST00000605787 1936 ntBASIC13.03□□□□□ -0.32
CDX1P47902 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC13.03□□□□□ -0.32
CDX1P47902 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
CDX1P47902 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC13.03□□□□□ -0.32
CDX1P47902 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
CDX1P47902 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
CDX1P47902 REXO1L2P-201ENST00000425429 2069 ntBASIC13.03□□□□□ -0.32
CDX1P47902 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
CDX1P47902 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 AC010491.1-201ENST00000563101 2797 ntBASIC13.03□□□□□ -0.32
CDX1P47902 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CDX1P47902 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC13.03□□□□□ -0.32
CDX1P47902 CNN2P11-201ENST00000429351 262 ntBASIC13.03□□□□□ -0.32
CDX1P47902 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC13.03□□□□□ -0.32
CDX1P47902 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC13.03□□□□□ -0.32
CDX1P47902 AC109635.5-201ENST00000533593 962 ntBASIC13.03□□□□□ -0.32
CDX1P47902 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
CDX1P47902 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms