Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.06■□□□□ 0.16
COL6A3P12111 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC16.06■□□□□ 0.16
COL6A3P12111 AC023906.1-201ENST00000486386 453 ntBASIC16.06■□□□□ 0.16
COL6A3P12111 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
COL6A3P12111 ANKRD30BP2-201ENST00000435744 1610 ntBASIC16.06■□□□□ 0.16
COL6A3P12111 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A3P12111 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A3P12111 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A3P12111 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A3P12111 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.06■□□□□ 0.16
COL6A3P12111 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A3P12111 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A3P12111 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.06■□□□□ 0.16
COL6A3P12111 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A3P12111 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16.06■□□□□ 0.16
COL6A3P12111 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.06■□□□□ 0.16
COL6A3P12111 ACTBP8-201ENST00000403258 1108 ntBASIC16.06■□□□□ 0.16
COL6A3P12111 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A3P12111 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC16.06■□□□□ 0.16
COL6A3P12111 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC16.06■□□□□ 0.16
COL6A3P12111 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC16.06■□□□□ 0.16
COL6A3P12111 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A3P12111 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A3P12111 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.06■□□□□ 0.16
COL6A3P12111 CROCCP2-202ENST00000412962 2773 ntBASIC16.06■□□□□ 0.16
COL6A3P12111 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.06■□□□□ 0.16
COL6A3P12111 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A3P12111 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A3P12111 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A3P12111 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC16.06■□□□□ 0.16
COL6A3P12111 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
COL6A3P12111 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A3P12111 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A3P12111 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A3P12111 AL391256.1-201ENST00000443260 1855 ntBASIC16.05■□□□□ 0.16
COL6A3P12111 PCGF3-213ENST00000620529 1899 ntBASIC16.05■□□□□ 0.16
COL6A3P12111 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.05■□□□□ 0.16
COL6A3P12111 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A3P12111 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A3P12111 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A3P12111 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A3P12111 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC16.05■□□□□ 0.16
COL6A3P12111 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A3P12111 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A3P12111 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A3P12111 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC16.05■□□□□ 0.16
COL6A3P12111 BAK1P1-201ENST00000317045 636 ntBASIC16.05■□□□□ 0.16
COL6A3P12111 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A3P12111 RPL8P2-201ENST00000430538 502 ntBASIC16.05■□□□□ 0.16
COL6A3P12111 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC16.05■□□□□ 0.16
COL6A3P12111 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC16.05■□□□□ 0.16
COL6A3P12111 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A3P12111 AL672207.1-201ENST00000328462 1570 ntBASIC16.05■□□□□ 0.16
COL6A3P12111 INE2-201ENST00000630399 1874 ntBASIC16.05■□□□□ 0.16
COL6A3P12111 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A3P12111 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.05■□□□□ 0.16
COL6A3P12111 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.04■□□□□ 0.16
COL6A3P12111 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A3P12111 BX088651.3-201ENST00000418155 352 ntBASIC16.04■□□□□ 0.16
COL6A3P12111 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A3P12111 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC16.04■□□□□ 0.16
COL6A3P12111 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
COL6A3P12111 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC16.04■□□□□ 0.16
COL6A3P12111 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A3P12111 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A3P12111 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A3P12111 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.04■□□□□ 0.16
COL6A3P12111 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.04■□□□□ 0.16
COL6A3P12111 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC16.04■□□□□ 0.16
COL6A3P12111 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A3P12111 PCDHB18P-201ENST00000524813 2368 ntBASIC16.04■□□□□ 0.16
COL6A3P12111 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A3P12111 MRPS28-201ENST00000276585 850 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A3P12111 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A3P12111 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC16.04■□□□□ 0.16
COL6A3P12111 STK16-203ENST00000409516 895 ntTSL 2 BASIC16.04■□□□□ 0.16
COL6A3P12111 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC16.04■□□□□ 0.16
COL6A3P12111 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A3P12111 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC16.04■□□□□ 0.16
COL6A3P12111 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
COL6A3P12111 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A3P12111 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.04■□□□□ 0.16
COL6A3P12111 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC16.04■□□□□ 0.16
COL6A3P12111 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
COL6A3P12111 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
COL6A3P12111 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A3P12111 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A3P12111 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A3P12111 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.03■□□□□ 0.16
COL6A3P12111 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC16.03■□□□□ 0.16
COL6A3P12111 AC090820.1-201ENST00000519722 591 ntBASIC16.03■□□□□ 0.16
COL6A3P12111 AP000911.2-201ENST00000534330 502 ntBASIC16.03■□□□□ 0.16
COL6A3P12111 AP005212.2-201ENST00000584979 510 ntBASIC16.03■□□□□ 0.16
COL6A3P12111 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A3P12111 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A3P12111 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
COL6A3P12111 CMC2-224ENST00000630396 481 ntTSL 5 BASIC16.03■□□□□ 0.16
COL6A3P12111 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A3P12111 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A3P12111 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms