Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC15.25■□□□□ 0.03
SEMA3DO95025 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SEMA3DO95025 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SEMA3DO95025 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SEMA3DO95025 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC15.25■□□□□ 0.03
SEMA3DO95025 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
SEMA3DO95025 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SEMA3DO95025 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SEMA3DO95025 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SEMA3DO95025 AL035456.1-201ENST00000456064 1369 ntBASIC15.24■□□□□ 0.03
SEMA3DO95025 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SEMA3DO95025 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SEMA3DO95025 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
SEMA3DO95025 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SEMA3DO95025 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.24■□□□□ 0.03
SEMA3DO95025 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SEMA3DO95025 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
SEMA3DO95025 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
SEMA3DO95025 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.24■□□□□ 0.03
SEMA3DO95025 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
SEMA3DO95025 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.24■□□□□ 0.03
SEMA3DO95025 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SEMA3DO95025 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SEMA3DO95025 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.24■□□□□ 0.03
SEMA3DO95025 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
SEMA3DO95025 CNN2P11-201ENST00000429351 262 ntBASIC15.24■□□□□ 0.03
SEMA3DO95025 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.24■□□□□ 0.03
SEMA3DO95025 AC004967.1-201ENST00000453589 447 ntBASIC15.24■□□□□ 0.03
SEMA3DO95025 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SEMA3DO95025 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.24■□□□□ 0.03
SEMA3DO95025 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC15.24■□□□□ 0.03
SEMA3DO95025 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
SEMA3DO95025 BANF1P1-201ENST00000553684 263 ntBASIC15.24■□□□□ 0.03
SEMA3DO95025 AC105021.1-202ENST00000570572 669 ntBASIC15.24■□□□□ 0.03
SEMA3DO95025 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.24■□□□□ 0.03
SEMA3DO95025 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SEMA3DO95025 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.24■□□□□ 0.03
SEMA3DO95025 AP001059.3-201ENST00000619053 235 ntBASIC15.24■□□□□ 0.03
SEMA3DO95025 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SEMA3DO95025 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.24■□□□□ 0.03
SEMA3DO95025 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC15.24■□□□□ 0.03
SEMA3DO95025 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SEMA3DO95025 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SEMA3DO95025 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
SEMA3DO95025 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SEMA3DO95025 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SEMA3DO95025 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.24■□□□□ 0.03
SEMA3DO95025 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
SEMA3DO95025 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
SEMA3DO95025 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SEMA3DO95025 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SEMA3DO95025 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
SEMA3DO95025 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SEMA3DO95025 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.24■□□□□ 0.03
SEMA3DO95025 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
SEMA3DO95025 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.24■□□□□ 0.03
SEMA3DO95025 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.24■□□□□ 0.03
SEMA3DO95025 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SEMA3DO95025 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC15.23■□□□□ 0.03
SEMA3DO95025 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
SEMA3DO95025 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC15.23■□□□□ 0.03
SEMA3DO95025 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.23■□□□□ 0.03
SEMA3DO95025 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
SEMA3DO95025 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.23■□□□□ 0.03
SEMA3DO95025 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
SEMA3DO95025 KRT18P13-201ENST00000400056 1290 ntBASIC15.23■□□□□ 0.03
SEMA3DO95025 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 SPDYE7P-202ENST00000420373 878 ntBASIC15.23■□□□□ 0.03
SEMA3DO95025 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.23■□□□□ 0.03
SEMA3DO95025 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
SEMA3DO95025 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.23■□□□□ 0.03
SEMA3DO95025 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
SEMA3DO95025 AL512356.2-201ENST00000546955 174 ntBASIC15.23■□□□□ 0.03
SEMA3DO95025 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.23■□□□□ 0.03
SEMA3DO95025 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC15.23■□□□□ 0.03
SEMA3DO95025 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
SEMA3DO95025 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
SEMA3DO95025 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.23■□□□□ 0.03
SEMA3DO95025 AL450472.2-201ENST00000603663 1156 ntBASIC15.23■□□□□ 0.03
SEMA3DO95025 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms