Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
LDB3O75112 AC092127.1-201ENST00000567093 3455 ntBASIC14.93□□□□□ -0.02
LDB3O75112 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
LDB3O75112 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
LDB3O75112 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LDB3O75112 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC14.93□□□□□ -0.02
LDB3O75112 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LDB3O75112 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.93□□□□□ -0.02
LDB3O75112 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LDB3O75112 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC14.93□□□□□ -0.02
LDB3O75112 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LDB3O75112 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC14.93□□□□□ -0.02
LDB3O75112 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
LDB3O75112 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LDB3O75112 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.92□□□□□ -0.02
LDB3O75112 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC14.92□□□□□ -0.02
LDB3O75112 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LDB3O75112 AC092850.2-201ENST00000623821 2697 ntBASIC14.92□□□□□ -0.02
LDB3O75112 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDB3O75112 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDB3O75112 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.02
LDB3O75112 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDB3O75112 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LDB3O75112 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDB3O75112 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
LDB3O75112 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.02
LDB3O75112 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDB3O75112 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
LDB3O75112 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC14.92□□□□□ -0.02
LDB3O75112 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LDB3O75112 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.92□□□□□ -0.02
LDB3O75112 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC14.92□□□□□ -0.02
LDB3O75112 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
LDB3O75112 AC004890.2-204ENST00000481968 304 ntBASIC14.92□□□□□ -0.02
LDB3O75112 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC14.92□□□□□ -0.02
LDB3O75112 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.92□□□□□ -0.02
LDB3O75112 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LDB3O75112 AC044860.1-202ENST00000559481 777 ntBASIC14.92□□□□□ -0.02
LDB3O75112 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.92□□□□□ -0.02
LDB3O75112 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC14.92□□□□□ -0.02
LDB3O75112 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDB3O75112 AL355385.1-201ENST00000606123 409 ntBASIC14.92□□□□□ -0.02
LDB3O75112 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDB3O75112 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
LDB3O75112 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDB3O75112 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDB3O75112 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDB3O75112 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
LDB3O75112 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.92□□□□□ -0.02
LDB3O75112 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
LDB3O75112 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LDB3O75112 AL162727.3-201ENST00000635661 2787 ntBASIC14.92□□□□□ -0.02
LDB3O75112 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC14.92□□□□□ -0.02
LDB3O75112 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.92□□□□□ -0.02
LDB3O75112 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDB3O75112 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
LDB3O75112 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDB3O75112 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.92□□□□□ -0.02
LDB3O75112 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC14.92□□□□□ -0.02
LDB3O75112 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.92□□□□□ -0.02
LDB3O75112 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDB3O75112 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
LDB3O75112 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.91□□□□□ -0.02
LDB3O75112 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDB3O75112 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDB3O75112 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDB3O75112 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
LDB3O75112 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDB3O75112 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDB3O75112 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDB3O75112 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.91□□□□□ -0.02
LDB3O75112 AL607033.1-201ENST00000623900 1599 ntBASIC14.91□□□□□ -0.02
LDB3O75112 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDB3O75112 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDB3O75112 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC14.91□□□□□ -0.02
LDB3O75112 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.91□□□□□ -0.02
LDB3O75112 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
LDB3O75112 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDB3O75112 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.91□□□□□ -0.02
LDB3O75112 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDB3O75112 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDB3O75112 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.91□□□□□ -0.02
LDB3O75112 SYS1-203ENST00000414310 795 ntTSL 3 BASIC14.91□□□□□ -0.02
LDB3O75112 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.91□□□□□ -0.02
LDB3O75112 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.91□□□□□ -0.02
LDB3O75112 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.91□□□□□ -0.02
LDB3O75112 TARDBPP1-201ENST00000442013 1203 ntBASIC14.91□□□□□ -0.02
LDB3O75112 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LDB3O75112 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
LDB3O75112 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.91□□□□□ -0.02
LDB3O75112 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC14.91□□□□□ -0.02
LDB3O75112 AC025048.3-201ENST00000590609 569 ntBASIC14.91□□□□□ -0.02
LDB3O75112 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.91□□□□□ -0.02
LDB3O75112 AC097359.3-201ENST00000603982 1210 ntBASIC14.91□□□□□ -0.02
LDB3O75112 AC005702.4-201ENST00000618393 416 ntBASIC14.91□□□□□ -0.02
LDB3O75112 AL109936.8-201ENST00000641772 604 ntBASIC14.91□□□□□ -0.02
LDB3O75112 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDB3O75112 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDB3O75112 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.91□□□□□ -0.02
LDB3O75112 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms