Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC19.96■□□□□ 0.79
NPHP1O15259 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
NPHP1O15259 AL391069.4-201ENST00000609583 481 ntBASIC19.96■□□□□ 0.79
NPHP1O15259 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC19.96■□□□□ 0.79
NPHP1O15259 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
NPHP1O15259 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC19.96■□□□□ 0.79
NPHP1O15259 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
NPHP1O15259 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
NPHP1O15259 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC19.96■□□□□ 0.79
NPHP1O15259 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP1O15259 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC19.95■□□□□ 0.78
NPHP1O15259 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP1O15259 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP1O15259 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP1O15259 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP1O15259 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP1O15259 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP1O15259 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP1O15259 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP1O15259 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP1O15259 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP1O15259 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC19.95■□□□□ 0.78
NPHP1O15259 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP1O15259 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP1O15259 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP1O15259 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
NPHP1O15259 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
NPHP1O15259 AC005229.1-201ENST00000392885 409 ntBASIC19.95■□□□□ 0.78
NPHP1O15259 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC19.95■□□□□ 0.78
NPHP1O15259 TARDBPP1-201ENST00000442013 1203 ntBASIC19.95■□□□□ 0.78
NPHP1O15259 POU5F1P6-201ENST00000466990 990 ntBASIC19.95■□□□□ 0.78
NPHP1O15259 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP1O15259 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC19.95■□□□□ 0.78
NPHP1O15259 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC19.95■□□□□ 0.78
NPHP1O15259 BRI3BPP1-201ENST00000594224 787 ntBASIC19.95■□□□□ 0.78
NPHP1O15259 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
NPHP1O15259 MIR6869-201ENST00000619434 62 ntBASIC19.95■□□□□ 0.78
NPHP1O15259 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP1O15259 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP1O15259 AMT-232ENST00000636199 1546 ntTSL 5 BASIC19.95■□□□□ 0.78
NPHP1O15259 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC19.95■□□□□ 0.78
NPHP1O15259 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP1O15259 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP1O15259 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC19.95■□□□□ 0.78
NPHP1O15259 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC19.95■□□□□ 0.78
NPHP1O15259 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC19.95■□□□□ 0.78
NPHP1O15259 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NPHP1O15259 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP1O15259 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
NPHP1O15259 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP1O15259 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP1O15259 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP1O15259 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP1O15259 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
NPHP1O15259 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP1O15259 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP1O15259 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP1O15259 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP1O15259 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP1O15259 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC19.94■□□□□ 0.78
NPHP1O15259 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC19.94■□□□□ 0.78
NPHP1O15259 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
NPHP1O15259 C1QBPP1-201ENST00000400117 770 ntBASIC19.94■□□□□ 0.78
NPHP1O15259 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP1O15259 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC19.94■□□□□ 0.78
NPHP1O15259 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC19.94■□□□□ 0.78
NPHP1O15259 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
NPHP1O15259 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC19.94■□□□□ 0.78
NPHP1O15259 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC19.94■□□□□ 0.78
NPHP1O15259 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
NPHP1O15259 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP1O15259 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC19.94■□□□□ 0.78
NPHP1O15259 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC19.94■□□□□ 0.78
NPHP1O15259 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP1O15259 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP1O15259 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP1O15259 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NPHP1O15259 TUBB1P2-201ENST00000422712 1306 ntBASIC19.94■□□□□ 0.78
NPHP1O15259 TUBB1P1-201ENST00000503144 1300 ntBASIC19.94■□□□□ 0.78
NPHP1O15259 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
NPHP1O15259 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
NPHP1O15259 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP1O15259 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP1O15259 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC19.93■□□□□ 0.78
NPHP1O15259 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC19.93■□□□□ 0.78
NPHP1O15259 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP1O15259 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP1O15259 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP1O15259 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
NPHP1O15259 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP1O15259 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP1O15259 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
NPHP1O15259 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC19.93■□□□□ 0.78
NPHP1O15259 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC19.93■□□□□ 0.78
NPHP1O15259 RPL7P3-201ENST00000441388 714 ntBASIC19.93■□□□□ 0.78
NPHP1O15259 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC19.93■□□□□ 0.78
NPHP1O15259 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC19.93■□□□□ 0.78
NPHP1O15259 AGER-214ENST00000538695 487 ntTSL 2 BASIC19.93■□□□□ 0.78
NPHP1O15259 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC19.93■□□□□ 0.78
NPHP1O15259 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms