Protein–RNA interactions for Protein: Q9UDT6

CLIP2, CAP-Gly domain-containing linker protein 2, humanhuman

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2Q9UDT6 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC18.85■□□□□ 0.61
CLIP2Q9UDT6 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLIP2Q9UDT6 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLIP2Q9UDT6 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CLIP2Q9UDT6 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC18.85■□□□□ 0.61
CLIP2Q9UDT6 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC18.85■□□□□ 0.61
CLIP2Q9UDT6 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP2Q9UDT6 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP2Q9UDT6 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP2Q9UDT6 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC18.84■□□□□ 0.61
CLIP2Q9UDT6 BTBD7P1-201ENST00000447253 1453 ntBASIC18.84■□□□□ 0.61
CLIP2Q9UDT6 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CLIP2Q9UDT6 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
CLIP2Q9UDT6 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC18.84■□□□□ 0.61
CLIP2Q9UDT6 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP2Q9UDT6 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP2Q9UDT6 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP2Q9UDT6 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP2Q9UDT6 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC18.84■□□□□ 0.61
CLIP2Q9UDT6 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP2Q9UDT6 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC18.84■□□□□ 0.61
CLIP2Q9UDT6 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC18.84■□□□□ 0.61
CLIP2Q9UDT6 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC18.84■□□□□ 0.61
CLIP2Q9UDT6 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC18.84■□□□□ 0.61
CLIP2Q9UDT6 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC18.84■□□□□ 0.61
CLIP2Q9UDT6 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP2Q9UDT6 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP2Q9UDT6 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP2Q9UDT6 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP2Q9UDT6 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
CLIP2Q9UDT6 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CLIP2Q9UDT6 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
CLIP2Q9UDT6 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
CLIP2Q9UDT6 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC18.83■□□□□ 0.61
CLIP2Q9UDT6 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC18.83■□□□□ 0.61
CLIP2Q9UDT6 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC18.83■□□□□ 0.61
CLIP2Q9UDT6 CASK-202ENST00000378158 3848 ntTSL 5 BASIC18.83■□□□□ 0.61
CLIP2Q9UDT6 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
CLIP2Q9UDT6 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC18.83■□□□□ 0.61
CLIP2Q9UDT6 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC18.83■□□□□ 0.61
CLIP2Q9UDT6 AC144831.1-201ENST00000573312 2656 ntBASIC18.83■□□□□ 0.61
CLIP2Q9UDT6 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
CLIP2Q9UDT6 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CLIP2Q9UDT6 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
CLIP2Q9UDT6 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC18.83■□□□□ 0.61
CLIP2Q9UDT6 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CLIP2Q9UDT6 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC18.83■□□□□ 0.61
CLIP2Q9UDT6 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC18.83■□□□□ 0.6
CLIP2Q9UDT6 HIST3H2BA-201ENST00000436555 524 ntBASIC18.83■□□□□ 0.6
CLIP2Q9UDT6 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC18.83■□□□□ 0.6
CLIP2Q9UDT6 SDHAP3-202ENST00000515467 728 ntBASIC18.83■□□□□ 0.6
CLIP2Q9UDT6 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC18.83■□□□□ 0.6
CLIP2Q9UDT6 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CLIP2Q9UDT6 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLIP2Q9UDT6 AC104794.3-201ENST00000566840 1248 ntBASIC18.83■□□□□ 0.6
CLIP2Q9UDT6 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLIP2Q9UDT6 AL109936.8-201ENST00000641772 604 ntBASIC18.83■□□□□ 0.6
CLIP2Q9UDT6 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLIP2Q9UDT6 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CLIP2Q9UDT6 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC18.83■□□□□ 0.6
CLIP2Q9UDT6 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLIP2Q9UDT6 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CLIP2Q9UDT6 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC18.83■□□□□ 0.6
CLIP2Q9UDT6 AC007541.1-201ENST00000570282 1469 ntBASIC18.83■□□□□ 0.6
CLIP2Q9UDT6 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
CLIP2Q9UDT6 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLIP2Q9UDT6 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC18.83■□□□□ 0.6
CLIP2Q9UDT6 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 RASL12-203ENST00000434605 982 ntTSL 2 BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 SPDYE18-201ENST00000510091 1050 ntBASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 AL662799.1-202ENST00000614205 422 ntBASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms