Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL20A1Q9P218 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL20A1Q9P218 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL20A1Q9P218 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL20A1Q9P218 MGST3-203ENST00000367885 680 ntTSL 2 BASIC17.78■□□□□ 0.44
COL20A1Q9P218 APOA1-205ENST00000375329 927 ntTSL 2 BASIC17.78■□□□□ 0.44
COL20A1Q9P218 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC17.78■□□□□ 0.44
COL20A1Q9P218 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
COL20A1Q9P218 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL20A1Q9P218 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC17.78■□□□□ 0.44
COL20A1Q9P218 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC17.78■□□□□ 0.44
COL20A1Q9P218 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL20A1Q9P218 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC17.78■□□□□ 0.44
COL20A1Q9P218 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
COL20A1Q9P218 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC17.78■□□□□ 0.44
COL20A1Q9P218 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC17.78■□□□□ 0.44
COL20A1Q9P218 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC17.78■□□□□ 0.44
COL20A1Q9P218 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC17.78■□□□□ 0.44
COL20A1Q9P218 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC17.78■□□□□ 0.44
COL20A1Q9P218 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC17.78■□□□□ 0.44
COL20A1Q9P218 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL20A1Q9P218 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL20A1Q9P218 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
COL20A1Q9P218 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL20A1Q9P218 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL20A1Q9P218 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL20A1Q9P218 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL20A1Q9P218 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL20A1Q9P218 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC17.77■□□□□ 0.44
COL20A1Q9P218 MFF-204ENST00000353339 2186 ntTSL 5 BASIC17.77■□□□□ 0.44
COL20A1Q9P218 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL20A1Q9P218 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
COL20A1Q9P218 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC17.77■□□□□ 0.44
COL20A1Q9P218 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC17.77■□□□□ 0.44
COL20A1Q9P218 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL20A1Q9P218 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL20A1Q9P218 AGER-206ENST00000375070 1463 ntTSL 5 BASIC17.77■□□□□ 0.44
COL20A1Q9P218 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
COL20A1Q9P218 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL20A1Q9P218 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL20A1Q9P218 AL391005.1-201ENST00000623953 2435 ntBASIC17.77■□□□□ 0.44
COL20A1Q9P218 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL20A1Q9P218 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL20A1Q9P218 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL20A1Q9P218 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL20A1Q9P218 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.77■□□□□ 0.44
COL20A1Q9P218 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
COL20A1Q9P218 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC17.77■□□□□ 0.44
COL20A1Q9P218 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL20A1Q9P218 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC17.77■□□□□ 0.44
COL20A1Q9P218 RPL28-203ENST00000428193 573 ntTSL 2 BASIC17.77■□□□□ 0.44
COL20A1Q9P218 RPL28-204ENST00000431533 590 ntTSL 2 BASIC17.77■□□□□ 0.44
COL20A1Q9P218 BCRP2-202ENST00000447763 634 ntBASIC17.77■□□□□ 0.44
COL20A1Q9P218 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC17.77■□□□□ 0.44
COL20A1Q9P218 AC093433.1-201ENST00000458048 571 ntBASIC17.77■□□□□ 0.44
COL20A1Q9P218 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
COL20A1Q9P218 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL20A1Q9P218 BCRP6-201ENST00000510112 632 ntBASIC17.77■□□□□ 0.44
COL20A1Q9P218 BCRP7-201ENST00000511549 544 ntBASIC17.77■□□□□ 0.44
COL20A1Q9P218 AC068587.3-201ENST00000526613 355 ntBASIC17.77■□□□□ 0.44
COL20A1Q9P218 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
COL20A1Q9P218 RPL28-207ENST00000558815 616 ntTSL 2 BASIC17.77■□□□□ 0.44
COL20A1Q9P218 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC17.77■□□□□ 0.44
COL20A1Q9P218 NAA38-206ENST00000576384 424 ntTSL 2 BASIC17.77■□□□□ 0.44
COL20A1Q9P218 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC17.77■□□□□ 0.44
COL20A1Q9P218 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC17.77■□□□□ 0.44
COL20A1Q9P218 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
COL20A1Q9P218 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC17.77■□□□□ 0.44
COL20A1Q9P218 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.77■□□□□ 0.44
COL20A1Q9P218 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL20A1Q9P218 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL20A1Q9P218 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.77■□□□□ 0.43
COL20A1Q9P218 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL20A1Q9P218 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL20A1Q9P218 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL20A1Q9P218 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL20A1Q9P218 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
COL20A1Q9P218 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
COL20A1Q9P218 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
COL20A1Q9P218 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL20A1Q9P218 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL20A1Q9P218 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL20A1Q9P218 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
COL20A1Q9P218 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.76■□□□□ 0.43
COL20A1Q9P218 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL20A1Q9P218 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL20A1Q9P218 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL20A1Q9P218 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC17.76■□□□□ 0.43
COL20A1Q9P218 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL20A1Q9P218 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL20A1Q9P218 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL20A1Q9P218 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL20A1Q9P218 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC17.76■□□□□ 0.43
COL20A1Q9P218 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL20A1Q9P218 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC17.76■□□□□ 0.43
COL20A1Q9P218 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC17.76■□□□□ 0.43
COL20A1Q9P218 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL20A1Q9P218 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL20A1Q9P218 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
COL20A1Q9P218 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms