Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 AC002056.1-201ENST00000395613 760 ntBASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 BX842568.4-201ENST00000421222 227 ntBASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 RARRES2P8-201ENST00000566335 367 ntBASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 AL365330.1-201ENST00000607459 531 ntBASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM56Q9BRZ2 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 AC022532.1-201ENST00000624563 1728 ntBASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 AC020658.6-201ENST00000623564 1870 ntBASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 AL355306.1-201ENST00000415580 579 ntBASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 PGAM5P1-201ENST00000518923 814 ntBASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 AC112191.1-201ENST00000523689 701 ntBASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 AL135744.1-201ENST00000565098 629 ntBASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 FAM197Y3-203ENST00000618346 717 ntBASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 AC092902.6-201ENST00000641783 218 ntBASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 TK2-221ENST00000620035 5060 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM56Q9BRZ2 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRIM56Q9BRZ2 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms