Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 AP003680.1-201ENST00000598970 3660 ntBASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 AC009477.1-201ENST00000452936 217 ntBASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 STOM-203ENST00000538954 1257 ntTSL 5 BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 MIR4745-201ENST00000577608 62 ntBASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 AC022188.1-201ENST00000620960 1664 ntBASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 CDC14C-201ENST00000428251 1719 ntBASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 LINC02447-202ENST00000501888 2146 ntBASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 RAC2-204ENST00000406508 893 ntTSL 5 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 AZGP1P1-201ENST00000411909 902 ntBASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 MRPS18AP1-201ENST00000414458 589 ntBASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 HIST3H2BA-201ENST00000436555 524 ntBASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 EEF1DP4-201ENST00000446006 880 ntBASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 AC044860.1-202ENST00000559481 777 ntBASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 AC009407.1-201ENST00000568958 598 ntBASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 MST1L-201ENST00000442552 2185 ntBASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTCHD1Q96NR3 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 AC069224.1-201ENST00000566372 1715 ntBASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms