Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 NDUFAB1P1-201ENST00000404262 460 ntBASIC20.61■□□□□ 0.89
USP54Q70EL1 AC016700.1-201ENST00000429424 312 ntBASIC20.61■□□□□ 0.89
USP54Q70EL1 TSACC-208ENST00000481479 741 ntTSL 2 BASIC20.61■□□□□ 0.89
USP54Q70EL1 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC20.61■□□□□ 0.89
USP54Q70EL1 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC20.61■□□□□ 0.89
USP54Q70EL1 MIR3619-201ENST00000579667 83 ntBASIC20.61■□□□□ 0.89
USP54Q70EL1 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
USP54Q70EL1 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP54Q70EL1 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP54Q70EL1 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USP54Q70EL1 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
USP54Q70EL1 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP54Q70EL1 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
USP54Q70EL1 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP54Q70EL1 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
USP54Q70EL1 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
USP54Q70EL1 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USP54Q70EL1 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP54Q70EL1 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP54Q70EL1 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP54Q70EL1 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP54Q70EL1 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP54Q70EL1 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP54Q70EL1 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USP54Q70EL1 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC20.61■□□□□ 0.89
USP54Q70EL1 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC20.61■□□□□ 0.89
USP54Q70EL1 NEU3-202ENST00000526068 431 ntTSL 2 BASIC20.61■□□□□ 0.89
USP54Q70EL1 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USP54Q70EL1 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC20.61■□□□□ 0.89
USP54Q70EL1 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC20.61■□□□□ 0.89
USP54Q70EL1 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP54Q70EL1 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC20.6■□□□□ 0.89
USP54Q70EL1 AC006449.5-201ENST00000610658 2098 ntBASIC20.6■□□□□ 0.89
USP54Q70EL1 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP54Q70EL1 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP54Q70EL1 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP54Q70EL1 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP54Q70EL1 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP54Q70EL1 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP54Q70EL1 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP54Q70EL1 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP54Q70EL1 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP54Q70EL1 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
USP54Q70EL1 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP54Q70EL1 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC20.6■□□□□ 0.89
USP54Q70EL1 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
USP54Q70EL1 AKR7A2P1-201ENST00000460134 915 ntBASIC20.6■□□□□ 0.89
USP54Q70EL1 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
USP54Q70EL1 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC20.6■□□□□ 0.89
USP54Q70EL1 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
USP54Q70EL1 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC20.6■□□□□ 0.89
USP54Q70EL1 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP54Q70EL1 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
USP54Q70EL1 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP54Q70EL1 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC20.6■□□□□ 0.89
USP54Q70EL1 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USP54Q70EL1 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC20.59■□□□□ 0.89
USP54Q70EL1 AC012313.1-201ENST00000593393 3059 ntBASIC20.59■□□□□ 0.89
USP54Q70EL1 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP54Q70EL1 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP54Q70EL1 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP54Q70EL1 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP54Q70EL1 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USP54Q70EL1 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USP54Q70EL1 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC20.59■□□□□ 0.89
USP54Q70EL1 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC20.59■□□□□ 0.89
USP54Q70EL1 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC20.59■□□□□ 0.89
USP54Q70EL1 ADM-202ENST00000524948 584 ntTSL 2 BASIC20.59■□□□□ 0.89
USP54Q70EL1 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC20.59■□□□□ 0.89
USP54Q70EL1 NDUFV2P1-201ENST00000596415 907 ntBASIC20.59■□□□□ 0.89
USP54Q70EL1 AL645939.5-201ENST00000606834 243 ntBASIC20.59■□□□□ 0.89
USP54Q70EL1 AC091812.3-201ENST00000621362 345 ntBASIC20.59■□□□□ 0.89
USP54Q70EL1 AC022748.3-201ENST00000621828 275 ntBASIC20.59■□□□□ 0.89
USP54Q70EL1 AC138627.1-207ENST00000641560 1006 ntBASIC20.59■□□□□ 0.89
USP54Q70EL1 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USP54Q70EL1 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USP54Q70EL1 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC20.59■□□□□ 0.89
USP54Q70EL1 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USP54Q70EL1 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
USP54Q70EL1 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC20.59■□□□□ 0.89
USP54Q70EL1 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC20.59■□□□□ 0.89
USP54Q70EL1 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP54Q70EL1 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
USP54Q70EL1 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC20.58■□□□□ 0.89
USP54Q70EL1 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP54Q70EL1 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
USP54Q70EL1 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
USP54Q70EL1 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
USP54Q70EL1 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP54Q70EL1 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC20.58■□□□□ 0.89
USP54Q70EL1 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC20.58■□□□□ 0.89
USP54Q70EL1 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC20.58■□□□□ 0.89
USP54Q70EL1 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP54Q70EL1 MESTP3-201ENST00000503460 968 ntBASIC20.58■□□□□ 0.89
USP54Q70EL1 NKG7-204ENST00000595217 816 ntTSL 2 BASIC20.58■□□□□ 0.89
USP54Q70EL1 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
USP54Q70EL1 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
USP54Q70EL1 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC20.58■□□□□ 0.89
USP54Q70EL1 AP000593.2-201ENST00000542775 1433 ntBASIC20.58■□□□□ 0.89
USP54Q70EL1 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms