Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SYNE3Q6ZMZ3 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SYNE3Q6ZMZ3 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SYNE3Q6ZMZ3 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 SPDYE17-201ENST00000412399 783 ntBASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 AC107890.1-201ENST00000422478 521 ntBASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 SATB1-217ENST00000493952 626 ntTSL 3 BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 AC069120.2-201ENST00000524091 540 ntBASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 EHF-205ENST00000527935 557 ntTSL 2 BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 AL079307.3-201ENST00000556114 283 ntBASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SYNE3Q6ZMZ3 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 KRT8P12-202ENST00000472924 1397 ntBASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 FO393414.2-201ENST00000405153 598 ntBASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 AL645939.2-201ENST00000427340 991 ntBASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 PHKG1P2-201ENST00000457537 863 ntBASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 AC092183.1-201ENST00000469884 875 ntBASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 AC140878.1-201ENST00000565277 250 ntBASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 SPIB-207ENST00000597855 564 ntTSL 4 BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 AL450472.2-201ENST00000603663 1156 ntBASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE3Q6ZMZ3 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 IMPDH1P4-201ENST00000445028 1534 ntBASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms