Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
H3F3AP84243 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.2□□□□□ -0.14
H3F3AP84243 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.2□□□□□ -0.14
H3F3AP84243 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 AC009477.1-201ENST00000452936 217 ntBASIC14.2□□□□□ -0.14
H3F3AP84243 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC14.2□□□□□ -0.14
H3F3AP84243 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.2□□□□□ -0.14
H3F3AP84243 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC14.2□□□□□ -0.14
H3F3AP84243 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC14.2□□□□□ -0.14
H3F3AP84243 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC14.2□□□□□ -0.14
H3F3AP84243 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.2□□□□□ -0.14
H3F3AP84243 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC14.2□□□□□ -0.14
H3F3AP84243 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.2□□□□□ -0.14
H3F3AP84243 DUT-210ENST00000559935 569 ntTSL 3 BASIC14.2□□□□□ -0.14
H3F3AP84243 AC025048.3-201ENST00000590609 569 ntBASIC14.2□□□□□ -0.14
H3F3AP84243 AC005498.2-205ENST00000593218 784 ntBASIC14.2□□□□□ -0.14
H3F3AP84243 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC14.2□□□□□ -0.14
H3F3AP84243 AC005702.4-201ENST00000618393 416 ntBASIC14.2□□□□□ -0.14
H3F3AP84243 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.2□□□□□ -0.14
H3F3AP84243 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
H3F3AP84243 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 HLA-DQB2-231ENST00000435145 2026 ntBASIC14.2□□□□□ -0.14
H3F3AP84243 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
H3F3AP84243 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 AGK-211ENST00000629555 2765 ntTSL 5 BASIC14.2□□□□□ -0.14
H3F3AP84243 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.2□□□□□ -0.14
H3F3AP84243 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H3F3AP84243 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC14.2□□□□□ -0.14
H3F3AP84243 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
H3F3AP84243 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC14.19□□□□□ -0.14
H3F3AP84243 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
H3F3AP84243 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC14.19□□□□□ -0.14
H3F3AP84243 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
H3F3AP84243 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
H3F3AP84243 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
H3F3AP84243 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.19□□□□□ -0.14
H3F3AP84243 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC14.19□□□□□ -0.14
H3F3AP84243 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
H3F3AP84243 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
H3F3AP84243 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
H3F3AP84243 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
H3F3AP84243 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
H3F3AP84243 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.19□□□□□ -0.14
H3F3AP84243 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC14.19□□□□□ -0.14
H3F3AP84243 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.19□□□□□ -0.14
H3F3AP84243 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC14.19□□□□□ -0.14
H3F3AP84243 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.19□□□□□ -0.14
H3F3AP84243 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.19□□□□□ -0.14
H3F3AP84243 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC14.19□□□□□ -0.14
H3F3AP84243 RN7SL618P-201ENST00000477850 296 ntBASIC14.19□□□□□ -0.14
H3F3AP84243 AC004890.2-204ENST00000481968 304 ntBASIC14.19□□□□□ -0.14
H3F3AP84243 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.19□□□□□ -0.14
H3F3AP84243 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.19□□□□□ -0.14
H3F3AP84243 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC14.19□□□□□ -0.14
H3F3AP84243 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC14.19□□□□□ -0.14
H3F3AP84243 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.19□□□□□ -0.14
H3F3AP84243 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
H3F3AP84243 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC14.19□□□□□ -0.14
H3F3AP84243 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC14.19□□□□□ -0.14
H3F3AP84243 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.19□□□□□ -0.14
H3F3AP84243 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
H3F3AP84243 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
H3F3AP84243 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
H3F3AP84243 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
H3F3AP84243 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
H3F3AP84243 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
H3F3AP84243 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.19□□□□□ -0.14
H3F3AP84243 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
H3F3AP84243 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
H3F3AP84243 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
H3F3AP84243 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
H3F3AP84243 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.19□□□□□ -0.14
H3F3AP84243 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
H3F3AP84243 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
H3F3AP84243 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.19□□□□□ -0.14
H3F3AP84243 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
H3F3AP84243 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
H3F3AP84243 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
H3F3AP84243 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
H3F3AP84243 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
H3F3AP84243 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
H3F3AP84243 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
H3F3AP84243 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
H3F3AP84243 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC14.18□□□□□ -0.14
H3F3AP84243 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
H3F3AP84243 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms