Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC13.06□□□□□ -0.32
CDX1P47902 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC13.06□□□□□ -0.32
CDX1P47902 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
CDX1P47902 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC13.06□□□□□ -0.32
CDX1P47902 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC13.06□□□□□ -0.32
CDX1P47902 HMGA1P7-201ENST00000406908 502 ntBASIC13.06□□□□□ -0.32
CDX1P47902 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC13.06□□□□□ -0.32
CDX1P47902 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 URGCP-206ENST00000446958 365 ntTSL 2 BASIC13.06□□□□□ -0.32
CDX1P47902 DNAJB3-202ENST00000449667 1266 ntBASIC13.06□□□□□ -0.32
CDX1P47902 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC13.06□□□□□ -0.32
CDX1P47902 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
CDX1P47902 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC13.06□□□□□ -0.32
CDX1P47902 FAM86C2P-203ENST00000528684 1004 ntBASIC13.06□□□□□ -0.32
CDX1P47902 AC087641.1-201ENST00000557561 1021 ntBASIC13.06□□□□□ -0.32
CDX1P47902 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC13.06□□□□□ -0.32
CDX1P47902 AC092902.6-201ENST00000641783 218 ntBASIC13.06□□□□□ -0.32
CDX1P47902 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
CDX1P47902 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 AC009090.5-201ENST00000624886 2285 ntBASIC13.06□□□□□ -0.32
CDX1P47902 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC13.06□□□□□ -0.32
CDX1P47902 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
CDX1P47902 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC13.06□□□□□ -0.32
CDX1P47902 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
CDX1P47902 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC13.06□□□□□ -0.32
CDX1P47902 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC13.05□□□□□ -0.32
CDX1P47902 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC13.05□□□□□ -0.32
CDX1P47902 ACE-203ENST00000413513 2237 ntTSL 2 BASIC13.05□□□□□ -0.32
CDX1P47902 PRAL-201ENST00000624952 3286 ntBASIC13.05□□□□□ -0.32
CDX1P47902 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC13.05□□□□□ -0.32
CDX1P47902 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC13.05□□□□□ -0.32
CDX1P47902 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.05□□□□□ -0.32
CDX1P47902 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC13.05□□□□□ -0.32
CDX1P47902 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC13.05□□□□□ -0.32
CDX1P47902 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
CDX1P47902 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC13.05□□□□□ -0.32
CDX1P47902 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC13.05□□□□□ -0.32
CDX1P47902 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC13.05□□□□□ -0.32
CDX1P47902 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 AC092183.1-201ENST00000469884 875 ntBASIC13.05□□□□□ -0.32
CDX1P47902 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC13.05□□□□□ -0.32
CDX1P47902 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
CDX1P47902 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
CDX1P47902 DUX4L17-201ENST00000557360 1267 ntBASIC13.05□□□□□ -0.32
CDX1P47902 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC13.05□□□□□ -0.32
CDX1P47902 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC13.05□□□□□ -0.32
CDX1P47902 WT1-AS_2.1-201ENST00000613208 137 ntBASIC13.05□□□□□ -0.32
CDX1P47902 AL161645.1-201ENST00000622716 1255 ntBASIC13.05□□□□□ -0.32
CDX1P47902 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC13.05□□□□□ -0.32
CDX1P47902 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
CDX1P47902 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC13.05□□□□□ -0.32
CDX1P47902 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
CDX1P47902 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC13.05□□□□□ -0.32
CDX1P47902 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC13.05□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms