Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
BRCA1P38398 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
BRCA1P38398 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC18.78■□□□□ 0.6
BRCA1P38398 AL008718.2-201ENST00000609206 1313 ntBASIC18.78■□□□□ 0.6
BRCA1P38398 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
BRCA1P38398 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
BRCA1P38398 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC18.78■□□□□ 0.6
BRCA1P38398 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
BRCA1P38398 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC18.78■□□□□ 0.6
BRCA1P38398 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.78■□□□□ 0.6
BRCA1P38398 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
BRCA1P38398 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
BRCA1P38398 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
BRCA1P38398 RPS15-201ENST00000233609 534 ntTSL 2 BASIC18.77■□□□□ 0.6
BRCA1P38398 PPOX-204ENST00000462866 473 ntTSL 5 BASIC18.77■□□□□ 0.6
BRCA1P38398 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC18.77■□□□□ 0.6
BRCA1P38398 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC18.77■□□□□ 0.6
BRCA1P38398 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
BRCA1P38398 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC18.77■□□□□ 0.6
BRCA1P38398 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
BRCA1P38398 MIR4313-201ENST00000580760 101 ntBASIC18.77■□□□□ 0.6
BRCA1P38398 RPS15-205ENST00000586686 562 ntTSL 5 BASIC18.77■□□□□ 0.6
BRCA1P38398 RPS15-208ENST00000591804 711 ntTSL 5 BASIC18.77■□□□□ 0.6
BRCA1P38398 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
BRCA1P38398 AL132994.2-201ENST00000603120 687 ntBASIC18.77■□□□□ 0.6
BRCA1P38398 AL162426.1-201ENST00000624141 743 ntBASIC18.77■□□□□ 0.6
BRCA1P38398 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
BRCA1P38398 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
BRCA1P38398 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
BRCA1P38398 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC18.77■□□□□ 0.6
BRCA1P38398 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
BRCA1P38398 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
BRCA1P38398 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
BRCA1P38398 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
BRCA1P38398 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
BRCA1P38398 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
BRCA1P38398 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC18.77■□□□□ 0.6
BRCA1P38398 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.77■□□□□ 0.6
BRCA1P38398 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.77■□□□□ 0.6
BRCA1P38398 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
BRCA1P38398 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
BRCA1P38398 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC18.77■□□□□ 0.6
BRCA1P38398 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC18.77■□□□□ 0.6
BRCA1P38398 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
BRCA1P38398 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC18.77■□□□□ 0.6
BRCA1P38398 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC18.77■□□□□ 0.6
BRCA1P38398 DNM1P30-201ENST00000563586 452 ntBASIC18.77■□□□□ 0.6
BRCA1P38398 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
BRCA1P38398 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC18.77■□□□□ 0.6
BRCA1P38398 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
BRCA1P38398 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
BRCA1P38398 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
BRCA1P38398 NEFHP1-201ENST00000412845 2629 ntBASIC18.77■□□□□ 0.59
BRCA1P38398 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC18.76■□□□□ 0.59
BRCA1P38398 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
BRCA1P38398 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
BRCA1P38398 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC18.76■□□□□ 0.59
BRCA1P38398 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
BRCA1P38398 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC18.76■□□□□ 0.59
BRCA1P38398 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC18.76■□□□□ 0.59
BRCA1P38398 AC010141.1-201ENST00000411585 623 ntBASIC18.76■□□□□ 0.59
BRCA1P38398 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
BRCA1P38398 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC18.76■□□□□ 0.59
BRCA1P38398 PIN4P1-201ENST00000451079 396 ntBASIC18.76■□□□□ 0.59
BRCA1P38398 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC18.76■□□□□ 0.59
BRCA1P38398 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC18.76■□□□□ 0.59
BRCA1P38398 AL645608.8-201ENST00000606034 2086 ntBASIC18.76■□□□□ 0.59
BRCA1P38398 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
BRCA1P38398 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC18.76■□□□□ 0.59
BRCA1P38398 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
BRCA1P38398 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC18.76■□□□□ 0.59
BRCA1P38398 CYP51A1P3-201ENST00000400072 1428 ntBASIC18.76■□□□□ 0.59
BRCA1P38398 AP000593.2-201ENST00000542775 1433 ntBASIC18.76■□□□□ 0.59
BRCA1P38398 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
BRCA1P38398 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC18.76■□□□□ 0.59
BRCA1P38398 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
BRCA1P38398 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
BRCA1P38398 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
BRCA1P38398 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
BRCA1P38398 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC18.75■□□□□ 0.59
BRCA1P38398 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC18.75■□□□□ 0.59
BRCA1P38398 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC18.75■□□□□ 0.59
BRCA1P38398 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BRCA1P38398 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
BRCA1P38398 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.75■□□□□ 0.59
BRCA1P38398 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
BRCA1P38398 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BRCA1P38398 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BRCA1P38398 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BRCA1P38398 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BRCA1P38398 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
BRCA1P38398 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
BRCA1P38398 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.75■□□□□ 0.59
BRCA1P38398 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
BRCA1P38398 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
BRCA1P38398 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BRCA1P38398 SOD2-202ENST00000367054 815 ntTSL 2 BASIC18.75■□□□□ 0.59
BRCA1P38398 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
BRCA1P38398 RPS9P1-201ENST00000419943 583 ntBASIC18.75■□□□□ 0.59
BRCA1P38398 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms