Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SCN4AP35499 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.29■□□□□ 0.52
SCN4AP35499 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC18.29■□□□□ 0.52
SCN4AP35499 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SCN4AP35499 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.29■□□□□ 0.52
SCN4AP35499 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SCN4AP35499 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC18.29■□□□□ 0.52
SCN4AP35499 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC18.29■□□□□ 0.52
SCN4AP35499 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SCN4AP35499 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC18.29■□□□□ 0.52
SCN4AP35499 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SCN4AP35499 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
SCN4AP35499 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC18.29■□□□□ 0.52
SCN4AP35499 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SCN4AP35499 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC18.29■□□□□ 0.52
SCN4AP35499 RPL17P45-201ENST00000586289 509 ntBASIC18.29■□□□□ 0.52
SCN4AP35499 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC18.29■□□□□ 0.52
SCN4AP35499 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
SCN4AP35499 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC18.29■□□□□ 0.52
SCN4AP35499 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SCN4AP35499 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC18.29■□□□□ 0.52
SCN4AP35499 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SCN4AP35499 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC18.29■□□□□ 0.52
SCN4AP35499 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC18.29■□□□□ 0.52
SCN4AP35499 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SCN4AP35499 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
SCN4AP35499 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SCN4AP35499 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC18.29■□□□□ 0.52
SCN4AP35499 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SCN4AP35499 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC18.29■□□□□ 0.52
SCN4AP35499 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SCN4AP35499 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
SCN4AP35499 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
SCN4AP35499 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC18.28■□□□□ 0.52
SCN4AP35499 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC18.28■□□□□ 0.52
SCN4AP35499 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC18.28■□□□□ 0.52
SCN4AP35499 RN7SL67P-201ENST00000492147 296 ntBASIC18.28■□□□□ 0.52
SCN4AP35499 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC18.28■□□□□ 0.52
SCN4AP35499 AC090857.1-201ENST00000527400 390 ntBASIC18.28■□□□□ 0.52
SCN4AP35499 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SCN4AP35499 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC18.28■□□□□ 0.52
SCN4AP35499 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC18.28■□□□□ 0.52
SCN4AP35499 AC242376.2-201ENST00000619355 883 ntBASIC18.28■□□□□ 0.52
SCN4AP35499 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SCN4AP35499 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SCN4AP35499 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SCN4AP35499 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC18.28■□□□□ 0.52
SCN4AP35499 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
SCN4AP35499 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SCN4AP35499 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.28■□□□□ 0.52
SCN4AP35499 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SCN4AP35499 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC18.28■□□□□ 0.52
SCN4AP35499 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
SCN4AP35499 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SCN4AP35499 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SCN4AP35499 CLUHP2-201ENST00000426660 1303 ntBASIC18.28■□□□□ 0.52
SCN4AP35499 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC18.28■□□□□ 0.52
SCN4AP35499 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SCN4AP35499 MFF-204ENST00000353339 2186 ntTSL 5 BASIC18.28■□□□□ 0.52
SCN4AP35499 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
SCN4AP35499 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
SCN4AP35499 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC18.28■□□□□ 0.52
SCN4AP35499 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SCN4AP35499 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SCN4AP35499 RPS9P1-201ENST00000419943 583 ntBASIC18.28■□□□□ 0.52
SCN4AP35499 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC18.28■□□□□ 0.52
SCN4AP35499 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC18.28■□□□□ 0.52
SCN4AP35499 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC18.28■□□□□ 0.52
SCN4AP35499 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC18.28■□□□□ 0.52
SCN4AP35499 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SCN4AP35499 RN7SL163P-201ENST00000583100 276 ntBASIC18.28■□□□□ 0.52
SCN4AP35499 AL358472.3-201ENST00000608147 415 ntBASIC18.28■□□□□ 0.52
SCN4AP35499 AC138466.3-201ENST00000619983 221 ntBASIC18.28■□□□□ 0.52
SCN4AP35499 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SCN4AP35499 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SCN4AP35499 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
SCN4AP35499 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SCN4AP35499 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SCN4AP35499 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SCN4AP35499 CYP51A1P3-201ENST00000400072 1428 ntBASIC18.27■□□□□ 0.52
SCN4AP35499 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC18.27■□□□□ 0.52
SCN4AP35499 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SCN4AP35499 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.27■□□□□ 0.52
SCN4AP35499 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SCN4AP35499 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC18.27■□□□□ 0.52
SCN4AP35499 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC18.27■□□□□ 0.52
SCN4AP35499 EHF-205ENST00000527935 557 ntTSL 2 BASIC18.27■□□□□ 0.52
SCN4AP35499 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC18.27■□□□□ 0.52
SCN4AP35499 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC18.27■□□□□ 0.52
SCN4AP35499 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
SCN4AP35499 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SCN4AP35499 AC018892.3-201ENST00000623986 2499 ntBASIC18.27■□□□□ 0.52
SCN4AP35499 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.27■□□□□ 0.51
SCN4AP35499 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SCN4AP35499 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
SCN4AP35499 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SCN4AP35499 AC141586.5-201ENST00000624546 2050 ntBASIC18.27■□□□□ 0.51
SCN4AP35499 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SCN4AP35499 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SCN4AP35499 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms