Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 AC104109.2-201ENST00000602919 1418 ntBASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 LBH-204ENST00000406087 559 ntTSL 4 BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 CAND2-206ENST00000626378 333 ntTSL 5 BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 ZNF259P1-201ENST00000407656 1365 ntBASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 CTBP1-AS2-206ENST00000581398 5652 ntBASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC54Q8NEL0 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 AC004987.2-201ENST00000395959 1148 ntBASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 CBR1-202ENST00000399191 838 ntTSL 3 BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 RNA5SP416-201ENST00000516838 111 ntBASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 PAUPAR-201ENST00000630360 2965 ntBASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 DBET-201ENST00000630918 3363 ntBASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC54Q8NEL0 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 BSG-215ENST00000618006 1329 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 AL691432.1-201ENST00000596308 1422 ntBASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC13.91□□□□□ -0.18
CCDC54Q8NEL0 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms