Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 SPDYE7P-202ENST00000420373 878 ntBASIC14.13□□□□□ -0.15
SKA3Q8IX90 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC14.13□□□□□ -0.15
SKA3Q8IX90 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SKA3Q8IX90 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SKA3Q8IX90 AC069262.1-201ENST00000539058 672 ntBASIC14.13□□□□□ -0.15
SKA3Q8IX90 AC004449.1-201ENST00000564240 433 ntBASIC14.13□□□□□ -0.15
SKA3Q8IX90 MIR4453-201ENST00000584019 89 ntBASIC14.13□□□□□ -0.15
SKA3Q8IX90 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC14.13□□□□□ -0.15
SKA3Q8IX90 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SKA3Q8IX90 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
SKA3Q8IX90 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SKA3Q8IX90 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SKA3Q8IX90 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SKA3Q8IX90 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
SKA3Q8IX90 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC14.13□□□□□ -0.15
SKA3Q8IX90 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
SKA3Q8IX90 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
SKA3Q8IX90 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
SKA3Q8IX90 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.13□□□□□ -0.15
SKA3Q8IX90 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC14.13□□□□□ -0.15
SKA3Q8IX90 AL365203.3-201ENST00000609742 2057 ntBASIC14.13□□□□□ -0.15
SKA3Q8IX90 MIR600HG-201ENST00000449175 5984 ntBASIC14.13□□□□□ -0.15
SKA3Q8IX90 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC14.13□□□□□ -0.15
SKA3Q8IX90 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SKA3Q8IX90 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SKA3Q8IX90 AC134407.2-201ENST00000625089 1978 ntBASIC14.13□□□□□ -0.15
SKA3Q8IX90 AL136982.4-201ENST00000437689 1740 ntBASIC14.12□□□□□ -0.15
SKA3Q8IX90 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC14.12□□□□□ -0.15
SKA3Q8IX90 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC14.12□□□□□ -0.15
SKA3Q8IX90 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC14.12□□□□□ -0.15
SKA3Q8IX90 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
SKA3Q8IX90 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
SKA3Q8IX90 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
SKA3Q8IX90 PAUPAR-201ENST00000630360 2965 ntBASIC14.12□□□□□ -0.15
SKA3Q8IX90 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
SKA3Q8IX90 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
SKA3Q8IX90 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.12□□□□□ -0.15
SKA3Q8IX90 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC14.12□□□□□ -0.15
SKA3Q8IX90 AL139010.1-201ENST00000454878 894 ntBASIC14.12□□□□□ -0.15
SKA3Q8IX90 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC14.12□□□□□ -0.15
SKA3Q8IX90 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC14.12□□□□□ -0.15
SKA3Q8IX90 AC105021.1-202ENST00000570572 669 ntBASIC14.12□□□□□ -0.15
SKA3Q8IX90 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC14.12□□□□□ -0.15
SKA3Q8IX90 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC14.12□□□□□ -0.15
SKA3Q8IX90 AC026979.3-201ENST00000607315 403 ntBASIC14.12□□□□□ -0.15
SKA3Q8IX90 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC14.12□□□□□ -0.15
SKA3Q8IX90 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC14.12□□□□□ -0.15
SKA3Q8IX90 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
SKA3Q8IX90 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.12□□□□□ -0.15
SKA3Q8IX90 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
SKA3Q8IX90 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
SKA3Q8IX90 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC14.12□□□□□ -0.15
SKA3Q8IX90 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC14.12□□□□□ -0.15
SKA3Q8IX90 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 KRT18P28-201ENST00000453838 1332 ntBASIC14.12□□□□□ -0.15
SKA3Q8IX90 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
SKA3Q8IX90 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC14.12□□□□□ -0.15
SKA3Q8IX90 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 AP001282.1-201ENST00000531301 1499 ntBASIC14.12□□□□□ -0.15
SKA3Q8IX90 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SKA3Q8IX90 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms