Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 AL691432.1-201ENST00000596308 1422 ntBASIC16.61■□□□□ 0.25
RFWD3Q6PCD5 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
RFWD3Q6PCD5 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.61■□□□□ 0.25
RFWD3Q6PCD5 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RFWD3Q6PCD5 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
RFWD3Q6PCD5 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 SPDYE17-201ENST00000412399 783 ntBASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 AC002472.2-201ENST00000442739 958 ntBASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 AC009477.1-201ENST00000452936 217 ntBASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 AC008738.7-201ENST00000609744 511 ntBASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 AP002414.2-201ENST00000591780 3365 ntBASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 TDG-209ENST00000544861 1387 ntTSL 2 BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.6■□□□□ 0.25
RFWD3Q6PCD5 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 AC245100.5-201ENST00000452108 331 ntBASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 LHX6-205ENST00000464484 666 ntTSL 2 BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 STOM-203ENST00000538954 1257 ntTSL 5 BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 AC010336.2-201ENST00000564226 506 ntBASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFWD3Q6PCD5 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms