Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 AC018665.1-201ENST00000622927 1362 ntBASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 AC134915.1-201ENST00000426461 574 ntBASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 AL162726.2-201ENST00000438986 1017 ntBASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 AC234783.1-201ENST00000441761 496 ntBASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 VDAC1P7-201ENST00000462417 847 ntBASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 AL596087.1-201ENST00000400979 1969 ntBASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 AC011270.2-201ENST00000624293 2550 ntBASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
RNFT1Q5M7Z0 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 AC018695.7-201ENST00000624587 2492 ntBASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 INTS4P2-202ENST00000614726 2019 ntBASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 AL139384.1-201ENST00000612143 3047 ntBASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 ACTG1P3-201ENST00000431775 1114 ntBASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 AC233724.13-201ENST00000598383 410 ntBASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 AL049840.4-201ENST00000602422 811 ntBASIC14.24□□□□□ -0.13
RNFT1Q5M7Z0 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms