Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 FP236241.2-201ENST00000624906 1185 ntBASIC13.96□□□□□ -0.17
TFF3Q07654 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TFF3Q07654 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.17
TFF3Q07654 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC13.96□□□□□ -0.17
TFF3Q07654 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
TFF3Q07654 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC13.96□□□□□ -0.17
TFF3Q07654 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TFF3Q07654 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC13.96□□□□□ -0.17
TFF3Q07654 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC13.96□□□□□ -0.18
TFF3Q07654 AL691432.1-201ENST00000596308 1422 ntBASIC13.96□□□□□ -0.18
TFF3Q07654 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC13.96□□□□□ -0.18
TFF3Q07654 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC13.96□□□□□ -0.18
TFF3Q07654 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
TFF3Q07654 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.18
TFF3Q07654 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC13.96□□□□□ -0.18
TFF3Q07654 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
TFF3Q07654 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
TFF3Q07654 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
TFF3Q07654 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC13.95□□□□□ -0.18
TFF3Q07654 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
TFF3Q07654 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
TFF3Q07654 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
TFF3Q07654 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC13.95□□□□□ -0.18
TFF3Q07654 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
TFF3Q07654 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
TFF3Q07654 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC13.95□□□□□ -0.18
TFF3Q07654 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
TFF3Q07654 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
TFF3Q07654 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
TFF3Q07654 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC13.95□□□□□ -0.18
TFF3Q07654 AZGP1P1-201ENST00000411909 902 ntBASIC13.95□□□□□ -0.18
TFF3Q07654 AC074338.1-201ENST00000416825 156 ntBASIC13.95□□□□□ -0.18
TFF3Q07654 AC099336.1-201ENST00000417053 1171 ntBASIC13.95□□□□□ -0.18
TFF3Q07654 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC13.95□□□□□ -0.18
TFF3Q07654 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC13.95□□□□□ -0.18
TFF3Q07654 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
TFF3Q07654 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC13.95□□□□□ -0.18
TFF3Q07654 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
TFF3Q07654 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC13.95□□□□□ -0.18
TFF3Q07654 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC13.95□□□□□ -0.18
TFF3Q07654 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC13.95□□□□□ -0.18
TFF3Q07654 MIR6869-201ENST00000619434 62 ntBASIC13.95□□□□□ -0.18
TFF3Q07654 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
TFF3Q07654 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
TFF3Q07654 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC13.95□□□□□ -0.18
TFF3Q07654 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC13.95□□□□□ -0.18
TFF3Q07654 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC13.95□□□□□ -0.18
TFF3Q07654 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
TFF3Q07654 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
TFF3Q07654 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
TFF3Q07654 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
TFF3Q07654 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
TFF3Q07654 TUBB1P2-201ENST00000422712 1306 ntBASIC13.94□□□□□ -0.18
TFF3Q07654 TUBB1P1-201ENST00000503144 1300 ntBASIC13.94□□□□□ -0.18
TFF3Q07654 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC13.94□□□□□ -0.18
TFF3Q07654 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
TFF3Q07654 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
TFF3Q07654 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
TFF3Q07654 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
TFF3Q07654 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC13.94□□□□□ -0.18
TFF3Q07654 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
TFF3Q07654 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
TFF3Q07654 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
TFF3Q07654 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
TFF3Q07654 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC13.94□□□□□ -0.18
TFF3Q07654 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
TFF3Q07654 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
TFF3Q07654 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
TFF3Q07654 APOA1-205ENST00000375329 927 ntTSL 2 BASIC13.94□□□□□ -0.18
TFF3Q07654 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
TFF3Q07654 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
TFF3Q07654 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC13.94□□□□□ -0.18
TFF3Q07654 AC245100.3-201ENST00000441281 285 ntBASIC13.94□□□□□ -0.18
TFF3Q07654 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC13.94□□□□□ -0.18
TFF3Q07654 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC13.94□□□□□ -0.18
TFF3Q07654 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC13.94□□□□□ -0.18
TFF3Q07654 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC13.94□□□□□ -0.18
TFF3Q07654 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
TFF3Q07654 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
TFF3Q07654 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC13.94□□□□□ -0.18
TFF3Q07654 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC13.94□□□□□ -0.18
TFF3Q07654 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC13.94□□□□□ -0.18
TFF3Q07654 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
TFF3Q07654 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC13.94□□□□□ -0.18
TFF3Q07654 AL359711.2-201ENST00000563105 872 ntBASIC13.94□□□□□ -0.18
TFF3Q07654 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC13.94□□□□□ -0.18
TFF3Q07654 AL022328.1-201ENST00000610050 478 ntBASIC13.94□□□□□ -0.18
TFF3Q07654 MIR6787-201ENST00000616675 61 ntBASIC13.94□□□□□ -0.18
TFF3Q07654 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC13.94□□□□□ -0.18
TFF3Q07654 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
TFF3Q07654 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
TFF3Q07654 AL133338.1-201ENST00000565695 1517 ntBASIC13.94□□□□□ -0.18
TFF3Q07654 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
TFF3Q07654 FUK-207ENST00000571514 3054 ntTSL 2 BASIC13.94□□□□□ -0.18
TFF3Q07654 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC13.94□□□□□ -0.18
TFF3Q07654 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC13.94□□□□□ -0.18
TFF3Q07654 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
TFF3Q07654 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
TFF3Q07654 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
TFF3Q07654 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms