Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LMO4P61968 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LMO4P61968 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LMO4P61968 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LMO4P61968 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LMO4P61968 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC12.95□□□□□ -0.34
LMO4P61968 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LMO4P61968 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC12.95□□□□□ -0.34
LMO4P61968 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LMO4P61968 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LMO4P61968 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
LMO4P61968 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LMO4P61968 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC12.95□□□□□ -0.34
LMO4P61968 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LMO4P61968 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC12.95□□□□□ -0.34
LMO4P61968 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC12.95□□□□□ -0.34
LMO4P61968 CTBP2P5-201ENST00000454986 1264 ntBASIC12.95□□□□□ -0.34
LMO4P61968 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LMO4P61968 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC12.95□□□□□ -0.34
LMO4P61968 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC12.95□□□□□ -0.34
LMO4P61968 RPS24-214ENST00000613865 538 ntTSL 5 BASIC12.95□□□□□ -0.34
LMO4P61968 METTL26-214ENST00000614890 801 ntTSL 3 BASIC12.95□□□□□ -0.34
LMO4P61968 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LMO4P61968 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LMO4P61968 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC12.95□□□□□ -0.34
LMO4P61968 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC12.95□□□□□ -0.34
LMO4P61968 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LMO4P61968 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC12.95□□□□□ -0.34
LMO4P61968 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LMO4P61968 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
LMO4P61968 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LMO4P61968 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
LMO4P61968 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
LMO4P61968 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LMO4P61968 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC12.95□□□□□ -0.34
LMO4P61968 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LMO4P61968 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC12.95□□□□□ -0.34
LMO4P61968 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC12.95□□□□□ -0.34
LMO4P61968 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LMO4P61968 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LMO4P61968 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC12.94□□□□□ -0.34
LMO4P61968 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LMO4P61968 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC12.94□□□□□ -0.34
LMO4P61968 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
LMO4P61968 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC12.94□□□□□ -0.34
LMO4P61968 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
LMO4P61968 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
LMO4P61968 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LMO4P61968 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LMO4P61968 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC12.94□□□□□ -0.34
LMO4P61968 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC12.94□□□□□ -0.34
LMO4P61968 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LMO4P61968 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LMO4P61968 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC12.94□□□□□ -0.34
LMO4P61968 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC12.94□□□□□ -0.34
LMO4P61968 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC12.94□□□□□ -0.34
LMO4P61968 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
LMO4P61968 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
LMO4P61968 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
LMO4P61968 AGER-206ENST00000375070 1463 ntTSL 5 BASIC12.94□□□□□ -0.34
LMO4P61968 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
LMO4P61968 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
LMO4P61968 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
LMO4P61968 ACKR1-201ENST00000368121 1240 ntBASIC12.94□□□□□ -0.34
LMO4P61968 TEX30-203ENST00000376022 828 ntTSL 2 BASIC12.94□□□□□ -0.34
LMO4P61968 AC092933.1-201ENST00000393644 945 ntBASIC12.94□□□□□ -0.34
LMO4P61968 SUN1-204ENST00000403868 978 ntTSL 2 BASIC12.94□□□□□ -0.34
LMO4P61968 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC12.94□□□□□ -0.34
LMO4P61968 AC012441.1-201ENST00000446669 685 ntBASIC12.94□□□□□ -0.34
LMO4P61968 AL355864.2-201ENST00000447420 863 ntBASIC12.94□□□□□ -0.34
LMO4P61968 KLF2P4-201ENST00000451959 1225 ntBASIC12.94□□□□□ -0.34
LMO4P61968 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
LMO4P61968 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC12.94□□□□□ -0.34
LMO4P61968 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC12.94□□□□□ -0.34
LMO4P61968 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC12.94□□□□□ -0.34
LMO4P61968 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LMO4P61968 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
LMO4P61968 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC12.94□□□□□ -0.34
LMO4P61968 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC12.94□□□□□ -0.34
LMO4P61968 MIR6799-201ENST00000620297 69 ntBASIC12.94□□□□□ -0.34
LMO4P61968 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
LMO4P61968 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
LMO4P61968 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC12.94□□□□□ -0.34
LMO4P61968 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
LMO4P61968 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
LMO4P61968 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC12.94□□□□□ -0.34
LMO4P61968 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
LMO4P61968 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC12.94□□□□□ -0.34
LMO4P61968 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC12.94□□□□□ -0.34
LMO4P61968 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
LMO4P61968 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC12.94□□□□□ -0.34
LMO4P61968 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
LMO4P61968 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
LMO4P61968 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
LMO4P61968 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
LMO4P61968 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC12.93□□□□□ -0.34
LMO4P61968 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LMO4P61968 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LMO4P61968 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC12.93□□□□□ -0.34
LMO4P61968 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms