Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 CAP2P1-201ENST00000557743 1390 ntBASIC18.81■□□□□ 0.6
BRCA1P38398 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
BRCA1P38398 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
BRCA1P38398 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
BRCA1P38398 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
BRCA1P38398 DNAJB1P1-201ENST00000429417 1024 ntBASIC18.81■□□□□ 0.6
BRCA1P38398 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC18.81■□□□□ 0.6
BRCA1P38398 RN7SL818P-201ENST00000485099 259 ntBASIC18.81■□□□□ 0.6
BRCA1P38398 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC18.81■□□□□ 0.6
BRCA1P38398 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC18.81■□□□□ 0.6
BRCA1P38398 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC18.81■□□□□ 0.6
BRCA1P38398 RN7SL725P-201ENST00000606439 259 ntBASIC18.81■□□□□ 0.6
BRCA1P38398 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
BRCA1P38398 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
BRCA1P38398 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
BRCA1P38398 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
BRCA1P38398 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
BRCA1P38398 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
BRCA1P38398 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
BRCA1P38398 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
BRCA1P38398 AC005052.1-201ENST00000625181 2492 ntBASIC18.8■□□□□ 0.6
BRCA1P38398 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
BRCA1P38398 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
BRCA1P38398 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
BRCA1P38398 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
BRCA1P38398 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
BRCA1P38398 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC18.8■□□□□ 0.6
BRCA1P38398 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
BRCA1P38398 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
BRCA1P38398 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC18.8■□□□□ 0.6
BRCA1P38398 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
BRCA1P38398 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC18.8■□□□□ 0.6
BRCA1P38398 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
BRCA1P38398 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
BRCA1P38398 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
BRCA1P38398 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
BRCA1P38398 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
BRCA1P38398 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
BRCA1P38398 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
BRCA1P38398 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
BRCA1P38398 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
BRCA1P38398 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC18.8■□□□□ 0.6
BRCA1P38398 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.8■□□□□ 0.6
BRCA1P38398 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
BRCA1P38398 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
BRCA1P38398 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
BRCA1P38398 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
BRCA1P38398 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
BRCA1P38398 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC18.8■□□□□ 0.6
BRCA1P38398 NAGK-204ENST00000443872 878 ntTSL 3 BASIC18.8■□□□□ 0.6
BRCA1P38398 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC18.8■□□□□ 0.6
BRCA1P38398 AC021723.1-201ENST00000486306 515 ntBASIC18.8■□□□□ 0.6
BRCA1P38398 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC18.8■□□□□ 0.6
BRCA1P38398 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC18.8■□□□□ 0.6
BRCA1P38398 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
BRCA1P38398 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC18.8■□□□□ 0.6
BRCA1P38398 MIR3677-201ENST00000578964 60 ntBASIC18.8■□□□□ 0.6
BRCA1P38398 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC18.8■□□□□ 0.6
BRCA1P38398 AC004923.1-202ENST00000642106 209 ntBASIC18.8■□□□□ 0.6
BRCA1P38398 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BRCA1P38398 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BRCA1P38398 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
BRCA1P38398 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
BRCA1P38398 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
BRCA1P38398 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
BRCA1P38398 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
BRCA1P38398 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
BRCA1P38398 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
BRCA1P38398 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
BRCA1P38398 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BRCA1P38398 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
BRCA1P38398 ME2P1-201ENST00000426028 1970 ntBASIC18.79■□□□□ 0.6
BRCA1P38398 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
BRCA1P38398 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BRCA1P38398 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
BRCA1P38398 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BRCA1P38398 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC18.79■□□□□ 0.6
BRCA1P38398 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BRCA1P38398 VDAC1P1-201ENST00000439229 848 ntBASIC18.79■□□□□ 0.6
BRCA1P38398 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC18.79■□□□□ 0.6
BRCA1P38398 DUX4L47-201ENST00000566374 394 ntBASIC18.79■□□□□ 0.6
BRCA1P38398 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC18.79■□□□□ 0.6
BRCA1P38398 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
BRCA1P38398 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
BRCA1P38398 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
BRCA1P38398 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC18.79■□□□□ 0.6
BRCA1P38398 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BRCA1P38398 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
BRCA1P38398 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
BRCA1P38398 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.78■□□□□ 0.6
BRCA1P38398 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
BRCA1P38398 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC18.78■□□□□ 0.6
BRCA1P38398 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC18.78■□□□□ 0.6
BRCA1P38398 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC18.78■□□□□ 0.6
BRCA1P38398 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
BRCA1P38398 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC18.78■□□□□ 0.6
BRCA1P38398 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
BRCA1P38398 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC18.78■□□□□ 0.6
BRCA1P38398 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
BRCA1P38398 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms