Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 SP100-205ENST00000409824 1802 ntTSL 5 BASIC17.15■□□□□ 0.34
CHRNA1P02708 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
CHRNA1P02708 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHRNA1P02708 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHRNA1P02708 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHRNA1P02708 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHRNA1P02708 AL133267.1-201ENST00000398220 340 ntBASIC17.15■□□□□ 0.34
CHRNA1P02708 RAC2-202ENST00000401529 569 ntTSL 4 BASIC17.15■□□□□ 0.34
CHRNA1P02708 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC17.15■□□□□ 0.34
CHRNA1P02708 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC17.15■□□□□ 0.34
CHRNA1P02708 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC17.15■□□□□ 0.34
CHRNA1P02708 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
CHRNA1P02708 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC17.15■□□□□ 0.34
CHRNA1P02708 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC17.15■□□□□ 0.34
CHRNA1P02708 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHRNA1P02708 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHRNA1P02708 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CHRNA1P02708 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHRNA1P02708 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHRNA1P02708 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC17.15■□□□□ 0.34
CHRNA1P02708 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHRNA1P02708 AC079328.2-201ENST00000561241 3354 ntBASIC17.15■□□□□ 0.34
CHRNA1P02708 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.15■□□□□ 0.34
CHRNA1P02708 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC17.15■□□□□ 0.34
CHRNA1P02708 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CHRNA1P02708 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CHRNA1P02708 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
CHRNA1P02708 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CHRNA1P02708 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CHRNA1P02708 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CHRNA1P02708 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
CHRNA1P02708 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
CHRNA1P02708 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
CHRNA1P02708 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CHRNA1P02708 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
CHRNA1P02708 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.33
CHRNA1P02708 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
CHRNA1P02708 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC17.14■□□□□ 0.33
CHRNA1P02708 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC17.14■□□□□ 0.33
CHRNA1P02708 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC17.14■□□□□ 0.33
CHRNA1P02708 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC17.14■□□□□ 0.33
CHRNA1P02708 GAPDHP40-201ENST00000505218 1006 ntBASIC17.14■□□□□ 0.33
CHRNA1P02708 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CHRNA1P02708 KRT90P-201ENST00000549264 1064 ntBASIC17.14■□□□□ 0.33
CHRNA1P02708 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
CHRNA1P02708 AC018695.7-201ENST00000624587 2492 ntBASIC17.14■□□□□ 0.33
CHRNA1P02708 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC17.14■□□□□ 0.33
CHRNA1P02708 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.14■□□□□ 0.33
CHRNA1P02708 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CHRNA1P02708 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CHRNA1P02708 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC17.14■□□□□ 0.33
CHRNA1P02708 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHRNA1P02708 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CHRNA1P02708 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CHRNA1P02708 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHRNA1P02708 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
CHRNA1P02708 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CHRNA1P02708 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CHRNA1P02708 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHRNA1P02708 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.13■□□□□ 0.33
CHRNA1P02708 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHRNA1P02708 ZBTB12BP-201ENST00000314232 1122 ntBASIC17.13■□□□□ 0.33
CHRNA1P02708 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
CHRNA1P02708 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CHRNA1P02708 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHRNA1P02708 BRWD1P1-201ENST00000401091 371 ntBASIC17.13■□□□□ 0.33
CHRNA1P02708 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
CHRNA1P02708 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CHRNA1P02708 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CHRNA1P02708 AC108725.1-201ENST00000495472 409 ntBASIC17.13■□□□□ 0.33
CHRNA1P02708 AP001582.1-201ENST00000525856 295 ntBASIC17.13■□□□□ 0.33
CHRNA1P02708 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC17.13■□□□□ 0.33
CHRNA1P02708 KSR1-207ENST00000578981 748 ntTSL 4 BASIC17.13■□□□□ 0.33
CHRNA1P02708 MIR6787-201ENST00000616675 61 ntBASIC17.13■□□□□ 0.33
CHRNA1P02708 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHRNA1P02708 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CHRNA1P02708 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHRNA1P02708 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHRNA1P02708 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC17.13■□□□□ 0.33
CHRNA1P02708 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC17.13■□□□□ 0.33
CHRNA1P02708 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CHRNA1P02708 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CHRNA1P02708 POLL-217ENST00000628479 1953 ntTSL 5 BASIC17.13■□□□□ 0.33
CHRNA1P02708 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CHRNA1P02708 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.13■□□□□ 0.33
CHRNA1P02708 FLII-221ENST00000578558 2377 ntTSL 5 BASIC17.13■□□□□ 0.33
CHRNA1P02708 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHRNA1P02708 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHRNA1P02708 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CHRNA1P02708 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.12■□□□□ 0.33
CHRNA1P02708 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHRNA1P02708 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHRNA1P02708 AL596087.1-201ENST00000400979 1969 ntBASIC17.12■□□□□ 0.33
CHRNA1P02708 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHRNA1P02708 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CHRNA1P02708 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC17.12■□□□□ 0.33
CHRNA1P02708 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC17.12■□□□□ 0.33
CHRNA1P02708 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC17.12■□□□□ 0.33
CHRNA1P02708 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC17.12■□□□□ 0.33
CHRNA1P02708 RPL8-205ENST00000527914 551 ntTSL 3 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms