Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SPTA1P02549 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SPTA1P02549 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SPTA1P02549 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
SPTA1P02549 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SPTA1P02549 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SPTA1P02549 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SPTA1P02549 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.35□□□□□ -0.11
SPTA1P02549 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC14.35□□□□□ -0.11
SPTA1P02549 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
SPTA1P02549 MIR1202-201ENST00000408529 83 ntBASIC14.35□□□□□ -0.11
SPTA1P02549 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SPTA1P02549 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC14.35□□□□□ -0.11
SPTA1P02549 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.35□□□□□ -0.11
SPTA1P02549 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC14.35□□□□□ -0.11
SPTA1P02549 EEF1DP1-201ENST00000585891 896 ntBASIC14.35□□□□□ -0.11
SPTA1P02549 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC14.35□□□□□ -0.11
SPTA1P02549 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SPTA1P02549 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SPTA1P02549 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SPTA1P02549 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
SPTA1P02549 AC005622.1-201ENST00000636801 1703 ntBASIC14.35□□□□□ -0.11
SPTA1P02549 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
SPTA1P02549 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC14.35□□□□□ -0.11
SPTA1P02549 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SPTA1P02549 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
SPTA1P02549 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
SPTA1P02549 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC14.35□□□□□ -0.11
SPTA1P02549 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SPTA1P02549 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
SPTA1P02549 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SPTA1P02549 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SPTA1P02549 AC018735.1-201ENST00000437208 1502 ntBASIC14.34□□□□□ -0.11
SPTA1P02549 ACKR1-201ENST00000368121 1240 ntBASIC14.34□□□□□ -0.11
SPTA1P02549 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SPTA1P02549 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC14.34□□□□□ -0.11
SPTA1P02549 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC14.34□□□□□ -0.11
SPTA1P02549 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC14.34□□□□□ -0.11
SPTA1P02549 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SPTA1P02549 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.34□□□□□ -0.11
SPTA1P02549 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
SPTA1P02549 AL049840.4-201ENST00000602422 811 ntBASIC14.34□□□□□ -0.11
SPTA1P02549 AL353726.2-201ENST00000623259 884 ntBASIC14.34□□□□□ -0.11
SPTA1P02549 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SPTA1P02549 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SPTA1P02549 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SPTA1P02549 AC067852.2-201ENST00000590513 2313 ntBASIC14.34□□□□□ -0.11
SPTA1P02549 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SPTA1P02549 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC14.34□□□□□ -0.11
SPTA1P02549 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
SPTA1P02549 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SPTA1P02549 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
SPTA1P02549 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SPTA1P02549 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SPTA1P02549 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
SPTA1P02549 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.34□□□□□ -0.11
SPTA1P02549 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SPTA1P02549 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC14.34□□□□□ -0.11
SPTA1P02549 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC14.34□□□□□ -0.11
SPTA1P02549 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC14.34□□□□□ -0.11
SPTA1P02549 AC097724.1-201ENST00000609581 426 ntBASIC14.34□□□□□ -0.11
SPTA1P02549 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC14.34□□□□□ -0.11
SPTA1P02549 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.34□□□□□ -0.11
SPTA1P02549 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SPTA1P02549 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SPTA1P02549 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
SPTA1P02549 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SPTA1P02549 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SPTA1P02549 LINC02012-201ENST00000608206 1725 ntBASIC14.34□□□□□ -0.11
SPTA1P02549 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SPTA1P02549 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SPTA1P02549 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
SPTA1P02549 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
SPTA1P02549 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC14.33□□□□□ -0.11
SPTA1P02549 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
SPTA1P02549 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
SPTA1P02549 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
SPTA1P02549 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC14.33□□□□□ -0.11
SPTA1P02549 PCGF3-213ENST00000620529 1899 ntBASIC14.33□□□□□ -0.11
SPTA1P02549 GRN-222ENST00000639447 1314 ntTSL 2 BASIC14.33□□□□□ -0.11
SPTA1P02549 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
SPTA1P02549 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SPTA1P02549 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SPTA1P02549 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SPTA1P02549 AC004987.2-201ENST00000395959 1148 ntBASIC14.33□□□□□ -0.12
SPTA1P02549 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC14.33□□□□□ -0.12
SPTA1P02549 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC14.33□□□□□ -0.12
SPTA1P02549 AL627389.1-201ENST00000413508 1182 ntBASIC14.33□□□□□ -0.12
SPTA1P02549 CNN2P8-201ENST00000421872 913 ntBASIC14.33□□□□□ -0.12
SPTA1P02549 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC14.33□□□□□ -0.12
SPTA1P02549 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC14.33□□□□□ -0.12
SPTA1P02549 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC14.33□□□□□ -0.12
SPTA1P02549 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC14.33□□□□□ -0.12
SPTA1P02549 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SPTA1P02549 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC14.33□□□□□ -0.12
SPTA1P02549 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
SPTA1P02549 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SPTA1P02549 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
SPTA1P02549 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SPTA1P02549 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms