Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM38O00635 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM38O00635 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
TRIM38O00635 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM38O00635 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
TRIM38O00635 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM38O00635 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM38O00635 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM38O00635 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM38O00635 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.06■□□□□ 0.16
TRIM38O00635 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM38O00635 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.06■□□□□ 0.16
TRIM38O00635 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM38O00635 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
TRIM38O00635 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
TRIM38O00635 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
TRIM38O00635 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
TRIM38O00635 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM38O00635 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM38O00635 AC022532.1-201ENST00000624563 1728 ntBASIC16.06■□□□□ 0.16
TRIM38O00635 AC006277.1-201ENST00000624348 1610 ntBASIC16.06■□□□□ 0.16
TRIM38O00635 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.06■□□□□ 0.16
TRIM38O00635 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.06■□□□□ 0.16
TRIM38O00635 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM38O00635 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM38O00635 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TRIM38O00635 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
TRIM38O00635 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM38O00635 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM38O00635 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM38O00635 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC16.06■□□□□ 0.16
TRIM38O00635 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM38O00635 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM38O00635 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM38O00635 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC16.06■□□□□ 0.16
TRIM38O00635 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM38O00635 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
TRIM38O00635 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM38O00635 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM38O00635 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM38O00635 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.06■□□□□ 0.16
TRIM38O00635 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM38O00635 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.06■□□□□ 0.16
TRIM38O00635 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.06■□□□□ 0.16
TRIM38O00635 RN7SL828P-201ENST00000607615 303 ntBASIC16.06■□□□□ 0.16
TRIM38O00635 AL589739.1-201ENST00000607720 493 ntBASIC16.06■□□□□ 0.16
TRIM38O00635 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM38O00635 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
TRIM38O00635 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
TRIM38O00635 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM38O00635 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM38O00635 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM38O00635 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM38O00635 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
TRIM38O00635 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM38O00635 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM38O00635 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
TRIM38O00635 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM38O00635 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM38O00635 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM38O00635 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM38O00635 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
TRIM38O00635 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM38O00635 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM38O00635 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM38O00635 AC099063.4-201ENST00000641099 1602 ntBASIC16.05■□□□□ 0.16
TRIM38O00635 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM38O00635 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM38O00635 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
TRIM38O00635 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
TRIM38O00635 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM38O00635 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.05■□□□□ 0.16
TRIM38O00635 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.05■□□□□ 0.16
TRIM38O00635 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.05■□□□□ 0.16
TRIM38O00635 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.05■□□□□ 0.16
TRIM38O00635 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM38O00635 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.05■□□□□ 0.16
TRIM38O00635 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM38O00635 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
TRIM38O00635 AC087499.5-201ENST00000452760 1342 ntBASIC16.05■□□□□ 0.16
TRIM38O00635 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC16.05■□□□□ 0.16
TRIM38O00635 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM38O00635 CETN4P-206ENST00000642099 2168 ntBASIC16.05■□□□□ 0.16
TRIM38O00635 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
TRIM38O00635 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.05■□□□□ 0.16
TRIM38O00635 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM38O00635 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM38O00635 COX5BP8-201ENST00000416911 349 ntBASIC16.05■□□□□ 0.16
TRIM38O00635 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM38O00635 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
TRIM38O00635 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
TRIM38O00635 MEIS3P1-201ENST00000495167 958 ntBASIC16.05■□□□□ 0.16
TRIM38O00635 AC098859.1-201ENST00000502915 1238 ntBASIC16.05■□□□□ 0.16
TRIM38O00635 STOM-203ENST00000538954 1257 ntTSL 5 BASIC16.05■□□□□ 0.16
TRIM38O00635 BANF1P1-201ENST00000553684 263 ntBASIC16.05■□□□□ 0.16
TRIM38O00635 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC16.05■□□□□ 0.16
TRIM38O00635 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.05■□□□□ 0.16
TRIM38O00635 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.05■□□□□ 0.16
TRIM38O00635 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM38O00635 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms