Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CCDC60Q8IWA6 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 PGF-202ENST00000405431 666 ntTSL 5 BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 U91328.1-201ENST00000437528 223 ntBASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 GIMAP3P-201ENST00000495150 836 ntBASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 PUDP-206ENST00000540122 825 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
CCDC60Q8IWA6 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 RERG-209ENST00000546331 1383 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 AC011495.1-201ENST00000498085 584 ntBASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC60Q8IWA6 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC17.58■□□□□ 0.41
CCDC60Q8IWA6 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
CCDC60Q8IWA6 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC60Q8IWA6 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC60Q8IWA6 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC60Q8IWA6 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC60Q8IWA6 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC60Q8IWA6 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC60Q8IWA6 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
CCDC60Q8IWA6 AL121723.1-201ENST00000445194 1519 ntBASIC17.58■□□□□ 0.41
CCDC60Q8IWA6 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC60Q8IWA6 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC60Q8IWA6 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC60Q8IWA6 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC60Q8IWA6 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CCDC60Q8IWA6 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CCDC60Q8IWA6 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC17.58■□□□□ 0.4
CCDC60Q8IWA6 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC17.58■□□□□ 0.4
CCDC60Q8IWA6 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC17.58■□□□□ 0.4
CCDC60Q8IWA6 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms