Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC14.27□□□□□ -0.12
RNFT1Q5M7Z0 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RNFT1Q5M7Z0 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.27□□□□□ -0.12
RNFT1Q5M7Z0 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.27□□□□□ -0.12
RNFT1Q5M7Z0 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC14.27□□□□□ -0.12
RNFT1Q5M7Z0 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RNFT1Q5M7Z0 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.27□□□□□ -0.12
RNFT1Q5M7Z0 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
RNFT1Q5M7Z0 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
RNFT1Q5M7Z0 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.27□□□□□ -0.12
RNFT1Q5M7Z0 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RNFT1Q5M7Z0 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RNFT1Q5M7Z0 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC14.27□□□□□ -0.12
RNFT1Q5M7Z0 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 ANKRD19P-201ENST00000338192 862 ntBASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 RPS2P32-201ENST00000439199 892 ntBASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 Six3os1_5.1-201ENST00000611000 271 ntBASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 WNT11-204ENST00000621122 789 ntTSL 5 BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 FER1L4-210ENST00000615531 5998 ntBASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 SP100-205ENST00000409824 1802 ntTSL 5 BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC14.27□□□□□ -0.13
RNFT1Q5M7Z0 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 MIR648-201ENST00000385046 94 ntBASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 HLA-V-201ENST00000429037 534 ntBASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 SLC25A47P1-201ENST00000531577 414 ntBASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 AC124283.3-201ENST00000570869 594 ntBASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 MIR5189-201ENST00000577370 114 ntBASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNFT1Q5M7Z0 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms