Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 HNRNPA1P40-201ENST00000426371 1278 ntBASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 BX005266.1-201ENST00000473402 457 ntBASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 PDPK2P-202ENST00000562415 1191 ntBASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 NAA60-208ENST00000570819 833 ntTSL 2 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 CYGB-205ENST00000590175 830 ntTSL 3 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 AC027307.3-201ENST00000594262 1100 ntBASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 AL513210.1-201ENST00000629608 234 ntBASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PDLIM3Q53GG5 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 AL353732.1-201ENST00000569618 1459 ntBASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 AC073621.1-201ENST00000392730 636 ntBASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 ARTN-206ENST00000472435 402 ntTSL 3 BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 MIR4751-201ENST00000578027 74 ntBASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 AC004706.3-202ENST00000621574 984 ntBASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 AP002414.2-201ENST00000591780 3365 ntBASIC13.31□□□□□ -0.28
PDLIM3Q53GG5 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms