Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 ZNF890P-202ENST00000530367 1156 ntBASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 AC104794.3-201ENST00000566840 1248 ntBASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 AL359881.2-201ENST00000602973 570 ntBASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 BTBD7P1-201ENST00000447253 1453 ntBASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 AC006449.6-201ENST00000612330 2296 ntBASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CCDC144BQ3MJ40 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 AC138969.3-201ENST00000546612 1459 ntBASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 AC138932.2-201ENST00000548268 1459 ntBASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 AC126755.4-201ENST00000549796 1459 ntBASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 VMO1-203ENST00000416307 712 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC144BQ3MJ40 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 AL512361.1-201ENST00000554200 418 ntBASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 AC010336.2-201ENST00000564226 506 ntBASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 AP002414.2-201ENST00000591780 3365 ntBASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC144BQ3MJ40 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC144BQ3MJ40 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms