Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
SOX4Q06945 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX4Q06945 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.89■□□□□ 0.29
SOX4Q06945 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX4Q06945 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
SOX4Q06945 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.89■□□□□ 0.29
SOX4Q06945 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC16.89■□□□□ 0.29
SOX4Q06945 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
SOX4Q06945 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
SOX4Q06945 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
SOX4Q06945 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.88■□□□□ 0.29
SOX4Q06945 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
SOX4Q06945 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX4Q06945 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX4Q06945 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX4Q06945 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
SOX4Q06945 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.88■□□□□ 0.29
SOX4Q06945 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SOX4Q06945 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX4Q06945 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX4Q06945 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX4Q06945 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
SOX4Q06945 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX4Q06945 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX4Q06945 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SOX4Q06945 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
SOX4Q06945 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
SOX4Q06945 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC16.88■□□□□ 0.29
SOX4Q06945 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SOX4Q06945 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC16.88■□□□□ 0.29
SOX4Q06945 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC16.88■□□□□ 0.29
SOX4Q06945 VDAC1P7-201ENST00000462417 847 ntBASIC16.88■□□□□ 0.29
SOX4Q06945 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.88■□□□□ 0.29
SOX4Q06945 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC16.88■□□□□ 0.29
SOX4Q06945 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.88■□□□□ 0.29
SOX4Q06945 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC16.88■□□□□ 0.29
SOX4Q06945 NOP2-220ENST00000545915 630 ntTSL 2 BASIC16.88■□□□□ 0.29
SOX4Q06945 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.88■□□□□ 0.29
SOX4Q06945 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX4Q06945 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC16.88■□□□□ 0.29
SOX4Q06945 AC010319.3-201ENST00000597028 470 ntBASIC16.88■□□□□ 0.29
SOX4Q06945 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC16.88■□□□□ 0.29
SOX4Q06945 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
SOX4Q06945 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX4Q06945 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SOX4Q06945 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX4Q06945 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX4Q06945 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX4Q06945 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SOX4Q06945 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SOX4Q06945 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SOX4Q06945 AL391005.1-201ENST00000623953 2435 ntBASIC16.88■□□□□ 0.29
SOX4Q06945 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.88■□□□□ 0.29
SOX4Q06945 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SOX4Q06945 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
SOX4Q06945 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
SOX4Q06945 PKD1P1-201ENST00000458669 6805 ntBASIC16.87■□□□□ 0.29
SOX4Q06945 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SOX4Q06945 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX4Q06945 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX4Q06945 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.87■□□□□ 0.29
SOX4Q06945 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX4Q06945 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SOX4Q06945 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SOX4Q06945 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX4Q06945 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SOX4Q06945 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.87■□□□□ 0.29
SOX4Q06945 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.87■□□□□ 0.29
SOX4Q06945 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX4Q06945 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX4Q06945 ARSEP1-201ENST00000420443 635 ntBASIC16.87■□□□□ 0.29
SOX4Q06945 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
SOX4Q06945 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SOX4Q06945 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC16.87■□□□□ 0.29
SOX4Q06945 NEU3-203ENST00000529024 581 ntTSL 3 BASIC16.87■□□□□ 0.29
SOX4Q06945 AC008735.3-201ENST00000596646 500 ntBASIC16.87■□□□□ 0.29
SOX4Q06945 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.87■□□□□ 0.29
SOX4Q06945 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SOX4Q06945 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.87■□□□□ 0.29
SOX4Q06945 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
SOX4Q06945 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX4Q06945 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
SOX4Q06945 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX4Q06945 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.87■□□□□ 0.29
SOX4Q06945 INTS4P2-202ENST00000614726 2019 ntBASIC16.87■□□□□ 0.29
SOX4Q06945 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.87■□□□□ 0.29
SOX4Q06945 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SOX4Q06945 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SOX4Q06945 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.87■□□□□ 0.29
SOX4Q06945 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.87■□□□□ 0.29
SOX4Q06945 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
SOX4Q06945 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX4Q06945 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
SOX4Q06945 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
SOX4Q06945 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX4Q06945 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX4Q06945 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.86■□□□□ 0.29
SOX4Q06945 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.86■□□□□ 0.29
SOX4Q06945 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.86■□□□□ 0.29
SOX4Q06945 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms