Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
PRKDCP78527 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
PRKDCP78527 GGT3P-204ENST00000453783 1664 ntBASIC11.16□□□□□ -0.62
PRKDCP78527 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
PRKDCP78527 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC11.16□□□□□ -0.62
PRKDCP78527 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC11.16□□□□□ -0.62
PRKDCP78527 AMT-204ENST00000427987 1646 ntTSL 5 BASIC11.16□□□□□ -0.62
PRKDCP78527 ANKRD30BP2-201ENST00000435744 1610 ntBASIC11.16□□□□□ -0.62
PRKDCP78527 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
PRKDCP78527 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC11.16□□□□□ -0.62
PRKDCP78527 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC11.16□□□□□ -0.62
PRKDCP78527 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC11.16□□□□□ -0.62
PRKDCP78527 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC11.16□□□□□ -0.62
PRKDCP78527 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC11.16□□□□□ -0.62
PRKDCP78527 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC11.16□□□□□ -0.62
PRKDCP78527 CR392039.1-201ENST00000623217 204 ntBASIC11.16□□□□□ -0.62
PRKDCP78527 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC11.16□□□□□ -0.62
PRKDCP78527 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
PRKDCP78527 KRT8P21-201ENST00000430398 1491 ntBASIC11.16□□□□□ -0.62
PRKDCP78527 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC11.16□□□□□ -0.62
PRKDCP78527 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
PRKDCP78527 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC11.16□□□□□ -0.62
PRKDCP78527 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
PRKDCP78527 POLL-217ENST00000628479 1953 ntTSL 5 BASIC11.16□□□□□ -0.62
PRKDCP78527 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC11.16□□□□□ -0.62
PRKDCP78527 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
PRKDCP78527 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC11.16□□□□□ -0.62
PRKDCP78527 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
PRKDCP78527 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC11.16□□□□□ -0.62
PRKDCP78527 AC093909.3-201ENST00000504783 336 ntBASIC11.16□□□□□ -0.62
PRKDCP78527 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC11.16□□□□□ -0.62
PRKDCP78527 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC11.16□□□□□ -0.62
PRKDCP78527 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC11.15□□□□□ -0.62
PRKDCP78527 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
PRKDCP78527 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC11.15□□□□□ -0.62
PRKDCP78527 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
PRKDCP78527 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC11.15□□□□□ -0.62
PRKDCP78527 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC11.15□□□□□ -0.62
PRKDCP78527 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
PRKDCP78527 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC11.15□□□□□ -0.62
PRKDCP78527 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
PRKDCP78527 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
PRKDCP78527 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
PRKDCP78527 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
PRKDCP78527 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
PRKDCP78527 HNRNPA1P58-201ENST00000403629 610 ntBASIC11.15□□□□□ -0.62
PRKDCP78527 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC11.15□□□□□ -0.62
PRKDCP78527 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC11.15□□□□□ -0.62
PRKDCP78527 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC11.15□□□□□ -0.62
PRKDCP78527 RN7SL258P-201ENST00000478664 300 ntBASIC11.15□□□□□ -0.62
PRKDCP78527 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC11.15□□□□□ -0.62
PRKDCP78527 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC11.15□□□□□ -0.62
PRKDCP78527 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
PRKDCP78527 HPN-206ENST00000597419 1212 ntTSL 5 BASIC11.15□□□□□ -0.62
PRKDCP78527 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
PRKDCP78527 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
PRKDCP78527 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC11.15□□□□□ -0.62
PRKDCP78527 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC11.15□□□□□ -0.62
PRKDCP78527 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC11.15□□□□□ -0.62
PRKDCP78527 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
PRKDCP78527 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC11.15□□□□□ -0.62
PRKDCP78527 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC11.15□□□□□ -0.62
PRKDCP78527 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
PRKDCP78527 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
PRKDCP78527 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC11.15□□□□□ -0.62
PRKDCP78527 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.62
PRKDCP78527 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC11.15□□□□□ -0.62
PRKDCP78527 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC11.15□□□□□ -0.62
PRKDCP78527 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC11.15□□□□□ -0.62
PRKDCP78527 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.62
PRKDCP78527 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
PRKDCP78527 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC11.15□□□□□ -0.62
PRKDCP78527 PEBP1P2-201ENST00000603980 558 ntBASIC11.15□□□□□ -0.62
PRKDCP78527 AL157813.1-201ENST00000612996 587 ntBASIC11.15□□□□□ -0.62
PRKDCP78527 AC008764.6-201ENST00000595909 2069 ntBASIC11.15□□□□□ -0.62
PRKDCP78527 AC067852.2-201ENST00000590513 2313 ntBASIC11.15□□□□□ -0.62
PRKDCP78527 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
PRKDCP78527 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
PRKDCP78527 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
PRKDCP78527 AC136759.1-202ENST00000530858 2194 ntBASIC11.15□□□□□ -0.63
PRKDCP78527 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC11.15□□□□□ -0.63
PRKDCP78527 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.63
PRKDCP78527 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC11.15□□□□□ -0.63
PRKDCP78527 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC11.15□□□□□ -0.63
PRKDCP78527 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC11.15□□□□□ -0.63
PRKDCP78527 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC11.15□□□□□ -0.63
PRKDCP78527 AP000911.2-201ENST00000534330 502 ntBASIC11.15□□□□□ -0.63
PRKDCP78527 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC11.15□□□□□ -0.63
PRKDCP78527 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
PRKDCP78527 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.63
PRKDCP78527 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC11.15□□□□□ -0.63
PRKDCP78527 AL139339.2-201ENST00000608063 657 ntBASIC11.15□□□□□ -0.63
PRKDCP78527 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
PRKDCP78527 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC11.14□□□□□ -0.63
PRKDCP78527 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC11.14□□□□□ -0.63
PRKDCP78527 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
PRKDCP78527 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
PRKDCP78527 KRT8P29-201ENST00000420409 1371 ntBASIC11.14□□□□□ -0.63
PRKDCP78527 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
PRKDCP78527 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms