Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CDH6P55285 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH6P55285 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CDH6P55285 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH6P55285 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CDH6P55285 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
CDH6P55285 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CDH6P55285 AC073347.1-201ENST00000421633 2643 ntBASIC16.59■□□□□ 0.25
CDH6P55285 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.59■□□□□ 0.25
CDH6P55285 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH6P55285 LINC00554-201ENST00000564841 3011 ntBASIC16.59■□□□□ 0.25
CDH6P55285 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.59■□□□□ 0.25
CDH6P55285 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC16.59■□□□□ 0.25
CDH6P55285 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH6P55285 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CDH6P55285 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CDH6P55285 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
CDH6P55285 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.58■□□□□ 0.25
CDH6P55285 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CDH6P55285 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.58■□□□□ 0.24
CDH6P55285 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDH6P55285 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDH6P55285 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.58■□□□□ 0.24
CDH6P55285 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CDH6P55285 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
CDH6P55285 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
CDH6P55285 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.24
CDH6P55285 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.58■□□□□ 0.24
CDH6P55285 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
CDH6P55285 AC026150.2-201ENST00000564693 1156 ntBASIC16.58■□□□□ 0.24
CDH6P55285 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.58■□□□□ 0.24
CDH6P55285 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.58■□□□□ 0.24
CDH6P55285 AC003101.2-201ENST00000612557 442 ntBASIC16.58■□□□□ 0.24
CDH6P55285 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC16.58■□□□□ 0.24
CDH6P55285 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.58■□□□□ 0.24
CDH6P55285 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.24
CDH6P55285 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
CDH6P55285 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
CDH6P55285 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDH6P55285 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDH6P55285 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CDH6P55285 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDH6P55285 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDH6P55285 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDH6P55285 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
CDH6P55285 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDH6P55285 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDH6P55285 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDH6P55285 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDH6P55285 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CDH6P55285 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC16.58■□□□□ 0.24
CDH6P55285 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH6P55285 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
CDH6P55285 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH6P55285 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CDH6P55285 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CDH6P55285 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.57■□□□□ 0.24
CDH6P55285 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.57■□□□□ 0.24
CDH6P55285 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16.57■□□□□ 0.24
CDH6P55285 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH6P55285 AC020658.6-201ENST00000623564 1870 ntBASIC16.57■□□□□ 0.24
CDH6P55285 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.57■□□□□ 0.24
CDH6P55285 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
CDH6P55285 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH6P55285 AC067930.6-201ENST00000623257 4947 ntBASIC16.57■□□□□ 0.24
CDH6P55285 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC16.57■□□□□ 0.24
CDH6P55285 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CDH6P55285 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH6P55285 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH6P55285 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH6P55285 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CDH6P55285 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH6P55285 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.57■□□□□ 0.24
CDH6P55285 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH6P55285 ELP6-209ENST00000446787 894 ntTSL 3 BASIC16.57■□□□□ 0.24
CDH6P55285 DNAJB3-202ENST00000449667 1266 ntBASIC16.57■□□□□ 0.24
CDH6P55285 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.57■□□□□ 0.24
CDH6P55285 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.57■□□□□ 0.24
CDH6P55285 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.57■□□□□ 0.24
CDH6P55285 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC16.57■□□□□ 0.24
CDH6P55285 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.57■□□□□ 0.24
CDH6P55285 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.57■□□□□ 0.24
CDH6P55285 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.57■□□□□ 0.24
CDH6P55285 AC105021.1-202ENST00000570572 669 ntBASIC16.57■□□□□ 0.24
CDH6P55285 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.57■□□□□ 0.24
CDH6P55285 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH6P55285 AL450472.2-201ENST00000603663 1156 ntBASIC16.57■□□□□ 0.24
CDH6P55285 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CDH6P55285 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.57■□□□□ 0.24
CDH6P55285 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
CDH6P55285 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH6P55285 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.57■□□□□ 0.24
CDH6P55285 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH6P55285 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH6P55285 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CDH6P55285 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
CDH6P55285 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH6P55285 AC136621.1-201ENST00000624017 2304 ntBASIC16.57■□□□□ 0.24
CDH6P55285 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CDH6P55285 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms