Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
EPHB3P54753 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
EPHB3P54753 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.54■□□□□ 0.24
EPHB3P54753 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
EPHB3P54753 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
EPHB3P54753 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.54■□□□□ 0.24
EPHB3P54753 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.54■□□□□ 0.24
EPHB3P54753 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.54■□□□□ 0.24
EPHB3P54753 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
EPHB3P54753 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
EPHB3P54753 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
EPHB3P54753 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
EPHB3P54753 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC16.54■□□□□ 0.24
EPHB3P54753 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
EPHB3P54753 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC16.54■□□□□ 0.24
EPHB3P54753 RPL28-204ENST00000431533 590 ntTSL 2 BASIC16.54■□□□□ 0.24
EPHB3P54753 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
EPHB3P54753 RPS2P32-201ENST00000439199 892 ntBASIC16.54■□□□□ 0.24
EPHB3P54753 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.54■□□□□ 0.24
EPHB3P54753 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC16.54■□□□□ 0.24
EPHB3P54753 KRT18P43-201ENST00000469825 1281 ntBASIC16.54■□□□□ 0.24
EPHB3P54753 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.54■□□□□ 0.24
EPHB3P54753 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC16.54■□□□□ 0.24
EPHB3P54753 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
EPHB3P54753 SLC25A47P1-201ENST00000531577 414 ntBASIC16.54■□□□□ 0.24
EPHB3P54753 TDH-203ENST00000531764 1110 ntBASIC16.54■□□□□ 0.24
EPHB3P54753 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.54■□□□□ 0.24
EPHB3P54753 RPL28-206ENST00000558752 671 ntTSL 3 BASIC16.54■□□□□ 0.24
EPHB3P54753 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.54■□□□□ 0.24
EPHB3P54753 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC16.54■□□□□ 0.24
EPHB3P54753 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.54■□□□□ 0.24
EPHB3P54753 AC233724.13-201ENST00000598383 410 ntBASIC16.54■□□□□ 0.24
EPHB3P54753 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
EPHB3P54753 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
EPHB3P54753 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.54■□□□□ 0.24
EPHB3P54753 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
EPHB3P54753 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
EPHB3P54753 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
EPHB3P54753 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
EPHB3P54753 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
EPHB3P54753 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
EPHB3P54753 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
EPHB3P54753 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
EPHB3P54753 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
EPHB3P54753 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC16.53■□□□□ 0.24
EPHB3P54753 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.53■□□□□ 0.24
EPHB3P54753 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
EPHB3P54753 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
EPHB3P54753 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC16.53■□□□□ 0.24
EPHB3P54753 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
EPHB3P54753 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
EPHB3P54753 NKILA-202ENST00000614771 2598 ntBASIC16.53■□□□□ 0.24
EPHB3P54753 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
EPHB3P54753 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
EPHB3P54753 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
EPHB3P54753 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
EPHB3P54753 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
EPHB3P54753 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
EPHB3P54753 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC16.53■□□□□ 0.24
EPHB3P54753 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
EPHB3P54753 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
EPHB3P54753 C1QBPP1-201ENST00000400117 770 ntBASIC16.53■□□□□ 0.24
EPHB3P54753 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
EPHB3P54753 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
EPHB3P54753 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
EPHB3P54753 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC16.53■□□□□ 0.24
EPHB3P54753 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC16.53■□□□□ 0.24
EPHB3P54753 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC16.53■□□□□ 0.24
EPHB3P54753 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
EPHB3P54753 USP32P1-208ENST00000506594 1164 ntBASIC16.53■□□□□ 0.24
EPHB3P54753 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
EPHB3P54753 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.53■□□□□ 0.24
EPHB3P54753 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.53■□□□□ 0.24
EPHB3P54753 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
EPHB3P54753 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC16.53■□□□□ 0.24
EPHB3P54753 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
EPHB3P54753 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC16.53■□□□□ 0.24
EPHB3P54753 AP005482.1-201ENST00000563722 1273 ntBASIC16.53■□□□□ 0.24
EPHB3P54753 AC120045.2-201ENST00000567334 178 ntBASIC16.53■□□□□ 0.24
EPHB3P54753 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC16.53■□□□□ 0.24
EPHB3P54753 Six3os1_5.1-201ENST00000611000 271 ntBASIC16.53■□□□□ 0.24
EPHB3P54753 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
EPHB3P54753 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
EPHB3P54753 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
EPHB3P54753 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.53■□□□□ 0.24
EPHB3P54753 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
EPHB3P54753 AC018892.3-201ENST00000623986 2499 ntBASIC16.53■□□□□ 0.24
EPHB3P54753 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
EPHB3P54753 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
EPHB3P54753 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
EPHB3P54753 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
EPHB3P54753 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC16.52■□□□□ 0.24
EPHB3P54753 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC16.52■□□□□ 0.24
EPHB3P54753 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
EPHB3P54753 AC018665.1-201ENST00000622927 1362 ntBASIC16.52■□□□□ 0.24
EPHB3P54753 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
EPHB3P54753 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.52■□□□□ 0.24
EPHB3P54753 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
EPHB3P54753 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.52■□□□□ 0.24
EPHB3P54753 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms