Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
MSH5O43196 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
MSH5O43196 VN1R31P-201ENST00000417498 730 ntBASIC22.32■■□□□ 1.16
MSH5O43196 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC22.32■■□□□ 1.16
MSH5O43196 AL450344.3-201ENST00000430770 378 ntTSL 3 BASIC22.32■■□□□ 1.16
MSH5O43196 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC22.32■■□□□ 1.16
MSH5O43196 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC22.32■■□□□ 1.16
MSH5O43196 HNRNPDLP2-201ENST00000455248 751 ntBASIC22.32■■□□□ 1.16
MSH5O43196 NPSR1-208ENST00000465305 814 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
MSH5O43196 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC22.32■■□□□ 1.16
MSH5O43196 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC22.32■■□□□ 1.16
MSH5O43196 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC22.32■■□□□ 1.16
MSH5O43196 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC22.32■■□□□ 1.16
MSH5O43196 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC22.32■■□□□ 1.16
MSH5O43196 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
MSH5O43196 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC22.32■■□□□ 1.16
MSH5O43196 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC22.32■■□□□ 1.16
MSH5O43196 CIPC-205ENST00000555437 566 ntTSL 3 BASIC22.32■■□□□ 1.16
MSH5O43196 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC22.32■■□□□ 1.16
MSH5O43196 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
MSH5O43196 AC015726.1-201ENST00000602353 681 ntBASIC22.32■■□□□ 1.16
MSH5O43196 AC068137.2-201ENST00000605408 478 ntBASIC22.32■■□□□ 1.16
MSH5O43196 AC012645.4-201ENST00000610691 1061 ntBASIC22.32■■□□□ 1.16
MSH5O43196 GGTLC5P-201ENST00000617623 998 ntBASIC22.32■■□□□ 1.16
MSH5O43196 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
MSH5O43196 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
MSH5O43196 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
MSH5O43196 AL353593.2-201ENST00000602529 1483 ntBASIC22.32■■□□□ 1.16
MSH5O43196 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
MSH5O43196 GMCL1P1-201ENST00000463439 1581 ntBASIC22.32■■□□□ 1.16
MSH5O43196 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
MSH5O43196 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
MSH5O43196 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
MSH5O43196 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
MSH5O43196 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
MSH5O43196 LINC01205-201ENST00000489670 1331 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
MSH5O43196 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
MSH5O43196 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC22.31■■□□□ 1.16
MSH5O43196 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC22.31■■□□□ 1.16
MSH5O43196 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
MSH5O43196 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
MSH5O43196 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
MSH5O43196 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
MSH5O43196 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC22.31■■□□□ 1.16
MSH5O43196 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
MSH5O43196 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
MSH5O43196 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
MSH5O43196 MS4A6A-213ENST00000530839 1383 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
MSH5O43196 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
MSH5O43196 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC22.31■■□□□ 1.16
MSH5O43196 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
MSH5O43196 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
MSH5O43196 RN7SKP230-201ENST00000365642 335 ntBASIC22.31■■□□□ 1.16
MSH5O43196 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
MSH5O43196 RSL24D1P1-201ENST00000404972 493 ntBASIC22.31■■□□□ 1.16
MSH5O43196 AL590240.2-201ENST00000413370 894 ntBASIC22.31■■□□□ 1.16
MSH5O43196 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC22.31■■□□□ 1.16
MSH5O43196 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC22.31■■□□□ 1.16
MSH5O43196 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC22.31■■□□□ 1.16
MSH5O43196 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC22.31■■□□□ 1.16
MSH5O43196 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC22.31■■□□□ 1.16
MSH5O43196 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC22.31■■□□□ 1.16
MSH5O43196 AC138701.1-201ENST00000524329 714 ntBASIC22.31■■□□□ 1.16
MSH5O43196 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
MSH5O43196 CSNK1A1P1-202ENST00000563423 981 ntBASIC22.31■■□□□ 1.16
MSH5O43196 OR7E47P-204ENST00000575924 449 ntBASIC22.31■■□□□ 1.16
MSH5O43196 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC22.31■■□□□ 1.16
MSH5O43196 AL136304.1-201ENST00000607790 509 ntBASIC22.31■■□□□ 1.16
MSH5O43196 OR5AR1-201ENST00000624596 1026 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
MSH5O43196 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC22.31■■□□□ 1.16
MSH5O43196 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC22.31■■□□□ 1.16
MSH5O43196 DBET-201ENST00000630918 3363 ntBASIC22.31■■□□□ 1.16
MSH5O43196 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC22.31■■□□□ 1.16
MSH5O43196 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
MSH5O43196 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC22.31■■□□□ 1.16
MSH5O43196 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
MSH5O43196 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC22.31■■□□□ 1.16
MSH5O43196 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
MSH5O43196 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
MSH5O43196 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSH5O43196 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC22.3■■□□□ 1.16
MSH5O43196 AL138688.1-201ENST00000624851 1594 ntBASIC22.3■■□□□ 1.16
MSH5O43196 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSH5O43196 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC22.3■■□□□ 1.16
MSH5O43196 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC22.3■■□□□ 1.16
MSH5O43196 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSH5O43196 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
MSH5O43196 AC236430.1-201ENST00000402231 743 ntBASIC22.3■■□□□ 1.16
MSH5O43196 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC22.3■■□□□ 1.16
MSH5O43196 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
MSH5O43196 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC22.3■■□□□ 1.16
MSH5O43196 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC22.3■■□□□ 1.16
MSH5O43196 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC22.3■■□□□ 1.16
MSH5O43196 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSH5O43196 RBMS3-207ENST00000445033 1120 ntTSL 2 BASIC22.3■■□□□ 1.16
MSH5O43196 SLBP-205ENST00000488267 987 ntTSL 2 BASIC22.3■■□□□ 1.16
MSH5O43196 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC22.3■■□□□ 1.16
MSH5O43196 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC22.3■■□□□ 1.16
MSH5O43196 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC22.3■■□□□ 1.16
MSH5O43196 AQP6-203ENST00000551733 849 ntTSL 3 BASIC22.3■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms