Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 ZEB1-AS1-208ENST00000607166 2503 ntBASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 MST1L-201ENST00000442552 2185 ntBASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 YBX2P1-201ENST00000394192 760 ntBASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 ALG1L5P-201ENST00000482043 771 ntBASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 POLD2P1-201ENST00000511220 997 ntBASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.19■□□□□ 0.18
TCRBV7S3A2A0A539 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 HLA-H-201ENST00000383620 1096 ntBASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 MIR574-201ENST00000385209 96 ntBASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 AL450472.2-201ENST00000603663 1156 ntBASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 AC097359.3-201ENST00000603982 1210 ntBASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.18■□□□□ 0.18
TCRBV7S3A2A0A539 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms